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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37193 (141 seq.)
>WENV180123153
OASV01033871
[OASV] human gut metagenome; faeces
151
63
-
Leu
TAA
[ENA]
¢þ
>WENV180126457
OASZ01007866
[OASZ] human gut metagenome; faeces
312
224
-
Leu
TAA
[ENA]
¢þ
>WENV180139986
OATT01002709
[OATT] human gut metagenome; faeces
256
344
+
Leu
TAA
[ENA]
¢þ
>WENV180141580
OATU01028550
[OATU] human gut metagenome; faeces
236
148
-
Leu
TAA
[ENA]
¢þ
>WENV180176117
OAWC01024997
[OAWC] human gut metagenome; faeces
280
368
+
Leu
TAA
[ENA]
¢þ
>WENV180197986
OBAB01047433
[OBAB] human gut metagenome; faeces
200
112
-
Leu
TAA
[ENA]
¢þ
>WENV180203993
OBAG01151279
[OBAG] human gut metagenome; human gut
185
97
-
Leu
TAA
[ENA]
¢þ
>WENV180220486
OBAS01098289
[OBAS] human gut metagenome; human gut
138
226
+
Leu
TAA
[ENA]
¢þ
>WENV180243621
OBDJ01042999
[OBDJ] human gut metagenome; human gut
259
347
+
Leu
TAA
[ENA]
¢þ
>WENV180290590
OBIU01046180
[OBIU] human gut metagenome; human gut
236
324
+
Leu
TAA
[ENA]
¢þ
>WENV180316350
OBKI01015835
[OBKI] human gut metagenome; human gut
694
782
+
Leu
TAA
[ENA]
¢þ
>WENV180326808
OBKS01183355
[OBKS] human gut metagenome; human gut
237
149
-
Leu
TAA
[ENA]
¢þ
>WENV180445946
OBXA01054132
[OBXA] human gut metagenome; faeces
10
98
+
Leu
TAA
[ENA]
¢þ
>WENV180462739
OBYB01048178
[OBYB] human gut metagenome; faeces
201
289
+
Leu
TAA
[ENA]
¢þ
>WENV180495249
OCAA01020109
[OCAA] human gut metagenome; faeces
152
64
-
Leu
TAA
[ENA]
¢þ
>WENV180518546
OCHD01078452
[OCHD] human gut metagenome; human gut
145
233
+
Leu
TAA
[ENA]
¢þ
>WENV180538816
OCHO01037381
[OCHO] human gut metagenome; human gut
707
619
-
Leu
TAA
[ENA]
¢þ
>WENV180608470
OCPU01054358
[OCPU] human gut metagenome; human gut
398
486
+
Leu
TAA
[ENA]
¢þ
>WENV180634113
OCRA01202419
[OCRA] human gut metagenome; human gut
123
210
+
Leu
TAA
[ENA]
¢þ
>WENV180647190
OCSH01042952
[OCSH] human gut metagenome; human gut
222
134
-
Leu
TAA
[ENA]
¢þ
>WENV180867797
ODLK01016230
[ODLK] human metagenome; G_DNA_Stool
493
581
+
Leu
TAA
[ENA]
¢þ
>WENV180994659
ODVQ01212804
[ODVQ] human metagenome; G_DNA_Stool
26
114
+
Leu
TAA
[ENA]
¢þ
>WENV181072973
OEAN01082301
[OEAN] human metagenome; G_DNA_Stool
207
119
-
Leu
TAA
[ENA]
¢þ
>WENV181155039
OEIC01119856
[OEIC] human metagenome; G_DNA_Stool
4
92
+
Leu
TAA
[ENA]
¢þ
>WENV181275764
OFGJ01047808
[OFGJ] mouse gut metagenome; faeces
384
472
+
Leu
TAA
[ENA]
¢þ
>WENV181280094
OFGN01031677
[OFGN] mouse gut metagenome; faeces
245
157
-
Leu
TAA
[ENA]
¢þ
>WENV181426928
OGCQ01019266
[OGCQ] human gut metagenome; human gut
694
782
+
Leu
TAA
[ENA]
¢þ
>WENV181442001
OGDN01036908
[OGDN] human gut metagenome; human gut
481
393
-
Leu
TAA
[ENA]
¢þ
>WENV181470806
OGEU01018891
[OGEU] metagenome; Human gut stool
1057
969
-
Leu
TAA
[ENA]
¢þ
>WENV181478107
OGFF01014103
[OGFF] metagenome; Human gut stool
614
702
+
Leu
TAA
[ENA]
¢þ
>WENV181483427
OGFK01004395
[OGFK] metagenome; Human gut stool
465
553
+
Leu
TAA
[ENA]
¢þ
>WENV181551486
OGIN01021288
[OGIN] metagenome; Human gut stool
541
629
+
Leu
TAA
[ENA]
¢þ
>WENV181592663
OGKR01037390
[OGKR] metagenome; Human gut stool
256
168
-
Leu
TAA
[ENA]
¢þ
>WENV181623173
OGMH01005003
[OGMH] metagenome; Human gut stool
957
869
-
Leu
TAA
[ENA]
¢þ
>WENV181626510
OGML01039764
[OGML] metagenome; Human gut stool
867
955
+
Leu
TAA
[ENA]
¢þ
>WENV181690378
OGOY01052651
[OGOY] human gut metagenome; faeces
484
572
+
Leu
TAA
[ENA]
¢þ
>WENV181715179
OGPR01041217
[OGPR] human gut metagenome; faeces
147
59
-
Leu
TAA
[ENA]
¢þ
>WENV181727235
OGPZ01047634
[OGPZ] human gut metagenome; faeces
159
247
+
Leu
TAA
[ENA]
¢þ
>WENV181763634
OGQX01010012
[OGQX] human gut metagenome; faeces
3815
3903
+
Leu
TAA
[ENA]
¢þ
>WENV181789933
OGRO01061151
[OGRO] human gut metagenome; faeces
327
239
-
Leu
TAA
[ENA]
¢þ
>WENV181793948
OGRR01025367
[OGRR] human gut metagenome; faeces
986
898
-
Leu
TAA
[ENA]
¢þ
>WENV181825989
OGUL01003694
[OGUL] human gut metagenome; faeces
8531
8443
-
Leu
TAA
[ENA]
¢þ
>WENV181829358
OGUN01014706
[OGUN] human gut metagenome; faeces
517
605
+
Leu
TAA
[ENA]
¢þ
>WENV181880846
OGXG01010456
[OGXG] human gut metagenome; faeces
2253
2341
+
Leu
TAA
[ENA]
¢þ
>WENV181981366
OHAG01001702
[OHAG] human gut metagenome; faeces
13355
13267
-
Leu
TAA
[ENA]
¢þ
>WENV182230111
OHRK01000720
[OHRK] human gut metagenome; feces
2345
2257
-
Leu
TAA
[ENA]
¢þ
>WENV182259335
OHTH01021469
[OHTH] human gut metagenome; feces
53
141
+
Leu
TAA
[ENA]
¢þ
>WENV182399188
OIEN01037580
[OIEN] human gut metagenome; human gut
762
850
+
Leu
TAA
[ENA]
¢þ
>WENV182509236
OIVY01010474
[OIVY] human gut metagenome; human gut
959
871
-
Leu
TAA
[ENA]
¢þ
>WENV182516250
OIWN01024211
[OIWN] human gut metagenome; faeces
778
690
-
Leu
TAA
[ENA]
¢þ
>WENV182671234
OJNL01023729
[OJNL] human gut metagenome; feces
215
127
-
Leu
TAA
[ENA]
¢þ
>WENV182701265
OJOP01008296
[OJOP] human gut metagenome; human gut
34
122
+
Leu
TAA
[ENA]
¢þ
>WENV182706514
OJOW01012214
[OJOW] human gut metagenome; stool sample
414
502
+
Leu
TAA
[ENA]
¢þ
>WENV182876274
OKRX01037665
[OKRX] human gut metagenome; faeces
541
453
-
Leu
TAA
[ENA]
¢þ
>WENV182880071
OKRZ01078529
[OKRZ] human gut metagenome; faeces
306
218
-
Leu
TAA
[ENA]
¢þ
>WENV182955378
OKWC01020790
[OKWC] human gut metagenome; human gut
142
230
+
Leu
TAA
[ENA]
¢þ
>WENV182965292
OKWR01059444
[OKWR] human gut metagenome; human gut
325
413
+
Leu
TAA
[ENA]
¢þ
>WENV183012487
OLEC01020125
[OLEC] human gut metagenome; human gut
602
514
-
Leu
TAA
[ENA]
¢þ
>WENV183013884
OLEH01007344
[OLEH] human gut metagenome; human gut
755
843
+
Leu
TAA
[ENA]
¢þ
>WENV183018052
OLEX01014356
[OLEX] human gut metagenome; human gut
177
265
+
Leu
TAA
[ENA]
¢þ
>WENV183019306
OLFB01011674
[OLFB] human gut metagenome; human gut
821
733
-
Leu
TAA
[ENA]
¢þ
>WENV183094490
OLNC01020195
[OLNC] human gut metagenome; faeces
233
145
-
Leu
TAA
[ENA]
¢þ
>WENV183098101
OLNE01034165
[OLNE] human gut metagenome; faeces
151
63
-
Leu
TAA
[ENA]
¢þ
>WENV183110802
OLNO01002189
[OLNO] human gut metagenome; faeces
13538
13450
-
Leu
TAA
[ENA]
¢þ
>WENV183126881
OLNY01049868
[OLNY] human gut metagenome; faeces
348
260
-
Leu
TAA
[ENA]
¢þ
>WENV183133038
OLOB01019541
[OLOB] human gut metagenome; faeces
888
976
+
Leu
TAA
[ENA]
¢þ
>WENV183133046
OLOB01019541
[OLOB] human gut metagenome; faeces
1615
1703
+
Leu
TAA
[ENA]
¢þ
>WENV183145133
OLOL01037439
[OLOL] human gut metagenome; faeces
629
717
+
Leu
TAA
[ENA]
¢þ
>WENV183153195
OLOQ01052967
[OLOQ] human gut metagenome; faeces
144
56
-
Leu
TAA
[ENA]
¢þ
>WENV183166091
OLOX01038147
[OLOX] human gut metagenome; faeces
285
197
-
Leu
TAA
[ENA]
¢þ
>WENV183173469
OLPD01006943
[OLPD] human gut metagenome; faeces
863
951
+
Leu
TAA
[ENA]
¢þ
>WENV183187711
OLPO01053831
[OLPO] human gut metagenome; faeces
453
365
-
Leu
TAA
[ENA]
¢þ
>WENV183210880
OLQC01008469
[OLQC] human gut metagenome; faeces
2341
2253
-
Leu
TAA
[ENA]
¢þ
>WENV183215809
OLQG01018928
[OLQG] human gut metagenome; faeces
516
428
-
Leu
TAA
[ENA]
¢þ
>WENV183234130
OLQV01012339
[OLQV] human gut metagenome; faeces
408
320
-
Leu
TAA
[ENA]
¢þ
>WENV183237688
OLQY01001092
[OLQY] human gut metagenome; faeces
10809
10897
+
Leu
TAA
[ENA]
¢þ
>WENV183241123
OLRA01053905
[OLRA] human gut metagenome; faeces
848
936
+
Leu
TAA
[ENA]
¢þ
>WENV183243310
OLRC01042089
[OLRC] human gut metagenome; faeces
403
491
+
Leu
TAA
[ENA]
¢þ
>WENV183282655
OLSC01007896
[OLSC] human gut metagenome; faeces
89
177
+
Leu
TAA
[ENA]
¢þ
>WENV183312823
OLVP01001059
[OLVP] human gut metagenome; faeces
18753
18665
-
Leu
TAA
[ENA]
¢þ
>WENV183324723
OLVY01044022
[OLVY] human gut metagenome; feces
246
158
-
Leu
TAA
[ENA]
¢þ
>WENV183433257
OMBT01010377
[OMBT] human gut metagenome; feces
273
361
+
Leu
TAA
[ENA]
¢þ
>WENV183470121
OMEJ01002180
[OMEJ] human gut metagenome; feces
2834
2922
+
Leu
TAA
[ENA]
¢þ
>WENV183541157
OOAK01003819
[OOAK] human gut metagenome; human gut
4423
4335
-
Leu
TAA
[ENA]
¢þ
>WENV183549699
OOAZ01007943
[OOAZ] human gut metagenome; human gut
2287
2199
-
Leu
TAA
[ENA]
¢þ
>WENV183551567
OOBI01039010
[OOBI] human gut metagenome; human gut
149
237
+
Leu
TAA
[ENA]
¢þ
>WENV183569477
OOCB01055944
[OOCB] human gut metagenome; human gut
315
227
-
Leu
TAA
[ENA]
¢þ
>WENV183589663
OOCW01002532
[OOCW] human gut metagenome; human gut
155
243
+
Leu
TAA
[ENA]
¢þ
>WENV183751694
PPYE01029166
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
461
549
+
Leu
TAA
[ENA]
¢þ
>WENV170690672
LFRM01355320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
544
632
+
Leu
TAA
[ENA]
¢þ
>W10115685
ADMN01000006
Bacillota
Turicibacter sanguinis PC909 [ADMN]
269
357
+
Leu
TAA
[ENA]
¡û
>W10115691
ADMN01000006
Bacillota
Turicibacter sanguinis PC909 [ADMN]
839
927
+
Leu
TAA
[ENA]
¡û
>W10115702
ADMN01000026
Bacillota
Turicibacter sanguinis PC909 [ADMN]
293
381
+
Leu
TAA
[ENA]
¡û
>W10115727
ADMN01000099
Bacillota
Turicibacter sanguinis PC909 [ADMN]
664
576
-
Leu
TAA
[ENA]
¡û
>W11120182
ADMN01000006
Bacillota
Turicibacter sanguinis PC909 [ADMN]
269
357
+
Leu
TAA
[ENA]
¡û
>W11120188
ADMN01000006
Bacillota
Turicibacter sanguinis PC909 [ADMN]
839
927
+
Leu
TAA
[ENA]
¡û
>W11120199
ADMN01000026
Bacillota
Turicibacter sanguinis PC909 [ADMN]
293
381
+
Leu
TAA
[ENA]
¡û
>W11120224
ADMN01000099
Bacillota
Turicibacter sanguinis PC909 [ADMN]
664
576
-
Leu
TAA
[ENA]
¡û
>W11151960
AEXQ01000039
Bacillota
Turicibacter sp. HGF1 [AEXQ]
14
102
+
Leu
TAA
[ENA]
¡û
>W11151973
AEXQ01000112
Bacillota
Turicibacter sp. HGF1 [AEXQ]
262
350
+
Leu
TAA
[ENA]
¡û
>W11151979
AEXQ01000112
Bacillota
Turicibacter sp. HGF1 [AEXQ]
832
920
+
Leu
TAA
[ENA]
¡û
>W11151988
AEXQ01000119
Bacillota
Turicibacter sp. HGF1 [AEXQ]
32994
32906
-
Leu
TAA
[ENA]
¡û
>W11151995
AEXQ01000135
Bacillota
Turicibacter sp. HGF1 [AEXQ]
288
376
+
Leu
TAA
[ENA]
¡û
>C161056060
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1818237
1818325
+
Leu
TAA
[Ensembl]
¡û
>C161056066
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1818928
1819016
+
Leu
TAA
[Ensembl]
¡û
>C161056087
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
952800
952712
-
Leu
TAA
[Ensembl]
¡û
>C161056109
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
574250
574162
-
Leu
TAA
[Ensembl]
¡û
>C161056117
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
486846
486758
-
Leu
TAA
[Ensembl]
¡û
>C161056127
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
485910
485822
-
Leu
TAA
[Ensembl]
¡û
>C161056141
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
483574
483486
-
Leu
TAA
[Ensembl]
¡û
>C161056155
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
482168
482080
-
Leu
TAA
[Ensembl]
¡û
>W1610098517
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
293985
293897
-
Leu
TAA
[ENA]
¡û
>W1610098537
CYXW01000011
Bacillota
Turicibacter sanguinis [CYXW]
138462
138374
-
Leu
TAA
[ENA]
¡û
>W1610098552
CYXW01000020
Bacillota
Turicibacter sanguinis [CYXW]
200
288
+
Leu
TAA
[ENA]
¡û
>W1610098564
CYXW01000037
Bacillota
Turicibacter sanguinis [CYXW]
385
297
-
Leu
TAA
[ENA]
¡û
>W1610099815
CYYS01000047
Bacillota
Turicibacter sanguinis [CYYS]
32
120
+
Leu
TAA
[ENA]
¡û
>W1610099828
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
1994
1906
-
Leu
TAA
[ENA]
¡û
>W1610099837
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
32
120
+
Leu
TAA
[ENA]
¡û
>W1610099850
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1357
1445
+
Leu
TAA
[ENA]
¡û
>W1610099861
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
516
428
-
Leu
TAA
[ENA]
¡û
>W1610101318
CYZQ01000012
Bacillota
Turicibacter sanguinis [CYZQ]
82940
82852
-
Leu
TAA
[ENA]
¡û
>W1610101331
CYZQ01000041
Bacillota
Turicibacter sanguinis [CYZQ]
32
120
+
Leu
TAA
[ENA]
¡û
>W1610101344
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
518
430
-
Leu
TAA
[ENA]
¡û
>W1610101351
CYZQ01000059
Bacillota
Turicibacter sanguinis [CYZQ]
263
351
+
Leu
TAA
[ENA]
¡û
>W1610104179
CZBN01000029
Bacillota
Turicibacter sanguinis [CZBN]
32452
32364
-
Leu
TAA
[ENA]
¡û
>W1610104201
CZBN01000131
Bacillota
Turicibacter sanguinis [CZBN]
339
251
-
Leu
TAA
[ENA]
¡û
>W1710101272
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
293985
293897
-
Leu
TAA
[ENA]
¡û
>W1710101292
CYXW01000011
Bacillota
Turicibacter sanguinis [CYXW]
138462
138374
-
Leu
TAA
[ENA]
¡û
>W1710101307
CYXW01000020
Bacillota
Turicibacter sanguinis [CYXW]
200
288
+
Leu
TAA
[ENA]
¡û
>W1710101319
CYXW01000037
Bacillota
Turicibacter sanguinis [CYXW]
385
297
-
Leu
TAA
[ENA]
¡û
>W1710102570
CYYS01000047
Bacillota
Turicibacter sanguinis [CYYS]
32
120
+
Leu
TAA
[ENA]
¡û
>W1710102583
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
1994
1906
-
Leu
TAA
[ENA]
¡û
>W1710102592
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
32
120
+
Leu
TAA
[ENA]
¡û
>W1710102605
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1357
1445
+
Leu
TAA
[ENA]
¡û
>W1710102616
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
516
428
-
Leu
TAA
[ENA]
¡û
>W1710104073
CYZQ01000012
Bacillota
Turicibacter sanguinis [CYZQ]
82940
82852
-
Leu
TAA
[ENA]
¡û
>W1710104086
CYZQ01000041
Bacillota
Turicibacter sanguinis [CYZQ]
32
120
+
Leu
TAA
[ENA]
¡û
>W1710104099
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
518
430
-
Leu
TAA
[ENA]
¡û
>W1710104106
CYZQ01000059
Bacillota
Turicibacter sanguinis [CYZQ]
263
351
+
Leu
TAA
[ENA]
¡û
>W1710106883
CZBN01000029
Bacillota
Turicibacter sanguinis [CZBN]
32452
32364
-
Leu
TAA
[ENA]
¡û
>W1710106905
CZBN01000131
Bacillota
Turicibacter sanguinis [CZBN]
339
251
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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