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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37198 (12 seq.)
>C181008681
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
1638689
1638600
-
Ser
CGA
-
¡û
>C181008968
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
1609954
1609865
-
Ser
CGA
-
¡û
>C181009139
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
1627342
1627253
-
Ser
CGA
-
¡û
>C181009597
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
1672419
1672330
-
Ser
CGA
-
¡û
>C181009801
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
1786109
1786198
+
Ser
CGA
-
¡û
>W2011617045
SKCI01000001
Alphaproteobacteria
Marimonas sp. GH1-19 [SKCI]
1262423
1262334
-
Ser
CGA
[ENA]
¡û
>W2012418002
WQDF01000015
Alphaproteobacteria
Ruegeria conchae HKCCA0712 [WQDF]
61699
61788
+
Ser
CGA
[ENA]
¡û
>W2110533945
JAGFNU010000002
Alphaproteobacteria
Pseudohalocynthiibacter aestuariivivens BS-W9 [JAGFNU]
176071
175982
-
Ser
CGA
[ENA]
¡û
>C231170478
CP081221
Alphaproteobacteria
Phaeobacter inhibens M626 [CP081221]
3145919
3146008
+
Ser
CGA
-
¡û
>C231170662
CP081235
Alphaproteobacteria
Phaeobacter inhibens M631 [CP081235]
1631843
1631754
-
Ser
CGA
-
¡û
>C241261808
CP125870
Alphaproteobacteria
Phaeobacter inhibens S4Sm [CP125870]
1816725
1816814
+
Ser
CGA
-
¡û
>W1710588806
FQZQ01000028
Alphaproteobacteria
Shimia gijangensis [FQZQ]
13255
13344
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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