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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37223 (4 seq.)
>W1711081946
LSTH01000178
Planctomycetota
Planctomyces sp. SCGC AG-212-M04 [LSTH]
14192
14279
+
Ser
GGA
[ENA]
¡û
>WENV181172806
OEIV010998474
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
57
144
+
Ser
GGA
[ENA]
¡û
>C241043913
CP036275
Planctomycetota
Maioricimonas rarisocia Mal4 [CP036275]
3068261
3068348
+
Ser
GGA
-
¡û
>W1610920781
LSTH01000178
Planctomycetota
Planctomyces sp. SCGC AG-212-M04 [LSTH]
14192
14279
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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