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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37247 (117 seq.)
>W131010445
AHYM01000013
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
101034
100945
-
Leu
TAA
[ENA]
¡û
>W131037518
AMFD01000013
Bacillota
Lactococcus garvieae I113 [AMFD]
93378
93289
-
Leu
TAA
[ENA]
¡û
>W131044519
AMQS01000046
Bacillota
Lactococcus garvieae DCC43 [AMQS]
8910
8821
-
Leu
TAA
[ENA]
¡û
>W1711612537
MOWR01000004
Bacillota
Streptococcus sp. 'caviae' [MOWR]
216
301
+
Leu
TAA
[ENA]
¡û
>W1711612551
MOWR01000014
Bacillota
Streptococcus sp. 'caviae' [MOWR]
31725
31640
-
Leu
TAA
[ENA]
¡û
>W1711744874
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
223928
223839
-
Leu
TAA
[ENA]
¡û
>W1712049640
NFUJ01000011
Bacillota
Streptococcus mutans [NFUJ]
15578
15493
-
Leu
TAA
[ENA]
¡û
>W1712069998
NGMT01000011
Bacillota
Enterococcus sp. 6C8_DIV0013 [NGMT]
2341
2256
-
Leu
TAA
[ENA]
¡û
>W131086866
AOCA01000001
Bacillota
Streptococcus mutans AC4446 [AOCA]
5711
5796
+
Leu
TAA
[ENA]
¡û
>W131086918
AOCA01000038
Bacillota
Streptococcus mutans AC4446 [AOCA]
132573
132658
+
Leu
TAA
[ENA]
¡û
>W141010134
AHRC01000128
Bacillota
Streptococcus mutans S1B [AHRC]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010162
AHRD01000074
Bacillota
Streptococcus mutans SA38 [AHRD]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010243
AHRG01000076
Bacillota
Streptococcus mutans R221 [AHRG]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010271
AHRH01000098
Bacillota
Streptococcus mutans M230 [AHRH]
303
218
-
Leu
TAA
[ENA]
¡û
>W141010391
AHRL01000088
Bacillota
Streptococcus mutans 4SM1 [AHRL]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010421
AHRM01000110
Bacillota
Streptococcus mutans 3SN1 [AHRM]
303
218
-
Leu
TAA
[ENA]
¡û
>W141010588
AHRS01000077
Bacillota
Streptococcus mutans 2VS1 [AHRS]
47
132
+
Leu
TAA
[ENA]
¡û
>W141010599
AHRT01000009
Bacillota
Streptococcus mutans 11VS1 [AHRT]
66682
66597
-
Leu
TAA
[ENA]
¡û
>W141010870
AHSC01000093
Bacillota
Streptococcus mutans G123 [AHSC]
303
218
-
Leu
TAA
[ENA]
¡û
>W141010905
AHSD01000095
Bacillota
Streptococcus mutans M21 [AHSD]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011016
AHSH01000101
Bacillota
Streptococcus mutans NLML4 [AHSH]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011066
AHSJ01000077
Bacillota
Streptococcus mutans NLML9 [AHSJ]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011095
AHSK01000088
Bacillota
Streptococcus mutans M2A [AHSK]
49
134
+
Leu
TAA
[ENA]
¡û
>W141011208
AHSO01000089
Bacillota
Streptococcus mutans W6 [AHSO]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011230
AHSP01000074
Bacillota
Streptococcus mutans SF1 [AHSP]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011265
AHSQ01000074
Bacillota
Streptococcus mutans SF14 [AHSQ]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011292
AHSR01000075
Bacillota
Streptococcus mutans SM6 [AHSR]
49
134
+
Leu
TAA
[ENA]
¡û
>W141011323
AHSS01000106
Bacillota
Streptococcus mutans ST1 [AHSS]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011462
AHSX01000080
Bacillota
Streptococcus mutans 1ID3 [AHSX]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011490
AHSY01000096
Bacillota
Streptococcus mutans 14D [AHSY]
49
134
+
Leu
TAA
[ENA]
¡û
>W141011547
AHTA01000078
Bacillota
Streptococcus mutans 66-2A [AHTA]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011579
AHTB01000101
Bacillota
Streptococcus mutans B [AHTB]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011604
AHTC01000144
Bacillota
Streptococcus mutans SM4 [AHTC]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011655
AHTE01000104
Bacillota
Streptococcus mutans 24 [AHTE]
49
134
+
Leu
TAA
[ENA]
¡û
>WENV180284832
OBID01130591
[OBID] metagenome; sludge
378
293
-
Leu
TAA
[ENA]
¢þ
>WENV180341837
OBLI01245483
[OBLI] pig gut metagenome; faeces
40
125
+
Leu
TAA
[ENA]
¢þ
>WENV180401921
OBRN01012359
[OBRN] human gut metagenome; ENVO:feces
236
151
-
Leu
TAA
[ENA]
¢þ
>W141039971
ALYO01000027
Bacillota
Streptococcus mutans B05Sm11 [ALYO]
5693
5778
+
Leu
TAA
[ENA]
¡û
>W141039981
ALYO01000028
Bacillota
Streptococcus mutans B05Sm11 [ALYO]
5693
5778
+
Leu
TAA
[ENA]
¡û
>W141040078
ALYQ01000038
Bacillota
Streptococcus mutans B12Sm1 [ALYQ]
529
444
-
Leu
TAA
[ENA]
¡û
>W141040109
ALYQ01000078
Bacillota
Streptococcus mutans B12Sm1 [ALYQ]
5805
5890
+
Leu
TAA
[ENA]
¡û
>W141040135
ALYR01000023
Bacillota
Streptococcus mutans B084SM-A [ALYR]
157293
157208
-
Leu
TAA
[ENA]
¡û
>W141040162
ALYR01000039
Bacillota
Streptococcus mutans B084SM-A [ALYR]
524
439
-
Leu
TAA
[ENA]
¡û
>W141040243
ALYT01000015
Bacillota
Streptococcus mutans B07Sm2 [ALYT]
5707
5792
+
Leu
TAA
[ENA]
¡û
>W141040260
ALYT01000025
Bacillota
Streptococcus mutans B07Sm2 [ALYT]
66771
66686
-
Leu
TAA
[ENA]
¡û
>W141040322
ALYU01000102
Bacillota
Streptococcus mutans B09Sm1 [ALYU]
108340
108255
-
Leu
TAA
[ENA]
¡û
>W141040496
ALYY01000022
Bacillota
Streptococcus mutans B04Sm5 [ALYY]
5805
5890
+
Leu
TAA
[ENA]
¡û
>W141040508
ALYY01000023
Bacillota
Streptococcus mutans B04Sm5 [ALYY]
5805
5890
+
Leu
TAA
[ENA]
¡û
>W141040625
ALZA01000048
Bacillota
Streptococcus mutans B06Sm2 [ALZA]
517
432
-
Leu
TAA
[ENA]
¡û
>W141040656
ALZA01000065
Bacillota
Streptococcus mutans B06Sm2 [ALZA]
66785
66700
-
Leu
TAA
[ENA]
¡û
>W141040954
ALZG01000021
Bacillota
Streptococcus mutans B114SM-A [ALZG]
216374
216289
-
Leu
TAA
[ENA]
¡û
>W141040989
ALZG01000039
Bacillota
Streptococcus mutans B114SM-A [ALZG]
5806
5891
+
Leu
TAA
[ENA]
¡û
>W141041010
ALZH01000026
Bacillota
Streptococcus mutans B115SM-A [ALZH]
149
234
+
Leu
TAA
[ENA]
¡û
>W141041023
ALZH01000031
Bacillota
Streptococcus mutans B115SM-A [ALZH]
77502
77417
-
Leu
TAA
[ENA]
¡û
>WENV180923308
ODTJ01113172
[ODTJ] human metagenome; G_DNA_Supragingival plaque
280
195
-
Leu
TAA
[ENA]
¢þ
>WENV180934046
ODTR01015202
[ODTR] human metagenome; G_DNA_Supragingival plaque
1019
934
-
Leu
TAA
[ENA]
¢þ
>WENV180972819
ODUW01000248
[ODUW] human metagenome; G_DNA_Supragingival plaque
31503
31418
-
Leu
TAA
[ENA]
¢þ
>W141096203
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
45206
45117
-
Leu
TAA
[ENA]
¡û
>WENV180987428
ODVK01023138
[ODVK] human metagenome; G_DNA_Supragingival plaque
1026
941
-
Leu
TAA
[ENA]
¢þ
>WENV181196812
OEQY01021557
[OEQY] metagenome; Caecal content
429
514
+
Leu
TAA
[ENA]
¢þ
>WENV181347502
OFMM01007623
[OFMM] human gut metagenome; human gut
226
141
-
Leu
TAA
[ENA]
¢þ
>W141229149
BAML01000023
Bacillota
Ligilactobacillus hayakitensis JCM 14209 [BAML]
552
637
+
Leu
TAA
[ENA]
¡û
>W141245673
CALL01000007
Bacillota
Lactococcus raffinolactis 4877 [CALL]
954
1039
+
Leu
TAA
[ENA]
¡û
>WENV182502827
OIUL01006787
[OIUL] human gut metagenome; human gut
72
159
+
Leu
TAA
[ENA]
¢þ
>WENV182518525
OIWP01001043
[OIWP] human gut metagenome; faeces
36472
36385
-
Leu
TAA
[ENA]
¢þ
>WENV183511399
OMJG01000186
[OMJG] food metagenome; Cotija cheese
92
180
+
Leu
TAA
[ENA]
¢þ
>WENV170547772
CXTS01000594
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
197
108
-
Leu
TAA
[ENA]
¢þ
>WENV170548326
CXUD01001401
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
303
214
-
Leu
TAA
[ENA]
¢þ
>WENV170549760
CXVH01002489
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
198
109
-
Leu
TAA
[ENA]
¢þ
>WENV170549796
CXVI01001225
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
268
181
-
Leu
TAA
[ENA]
¢þ
>C181001709
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1355926
1356014
+
Leu
TAA
-
¡û
>C181080425
CP023392
Bacillota
Lactococcus raffinolactis WiKim0068 [CP023392]
1191510
1191595
+
Leu
TAA
-
¡û
>C181080439
CP023392
Bacillota
Lactococcus raffinolactis WiKim0068 [CP023392]
1722617
1722702
+
Leu
TAA
-
¡û
>C181207380
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
20862
20947
+
Leu
TAA
-
¡û
>C181207430
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
1499281
1499196
-
Leu
TAA
-
¡û
>C191044539
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1821070
1820982
-
Leu
TAA
-
¡û
>C191206375
LR134320
Bacillota
Streptococcus mutans NCTC10832 [LR134320]
1974423
1974338
-
Leu
TAA
-
¡û
>C191206394
LR134320
Bacillota
Streptococcus mutans NCTC10832 [LR134320]
357824
357739
-
Leu
TAA
-
¡û
>W141712509
JMRL01000001
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
1214
1299
+
Leu
TAA
[ENA]
¡û
>W141712547
JMRL01000030
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
14118
14203
+
Leu
TAA
[ENA]
¡û
>W1910033515
BEDT01000002
Bacillota
Lactococcus reticulitermitis Rs-Y01 [BEDT]
635
720
+
Leu
TAA
[ENA]
¡û
>W1910583195
JXJT01000060
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JXJT]
576
661
+
Leu
TAA
[ENA]
¡û
>W1910583306
JXJW01000060
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
358
273
-
Leu
TAA
[ENA]
¡û
>W1910583334
JXJX01000033
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
466
551
+
Leu
TAA
[ENA]
¡û
>W1910583372
JXJY01000112
Bacillota
Lactococcus raffinolactis ATCC 43920 [JXJY]
377
292
-
Leu
TAA
[ENA]
¡û
>C09109722
AP010655
Bacillota
Streptococcus mutans NN2025 [AP010655]
22445
22530
+
Leu
TAA
[Ensembl]
¡û
>W1910889519
NETH01000074
Bacillota
Streptococcus gallolyticus BI02 [NETH]
5452
5367
-
Leu
TAA
[ENA]
¡û
>W1910889536
NETH01000106
Bacillota
Streptococcus gallolyticus BI02 [NETH]
1045
960
-
Leu
TAA
[ENA]
¡û
>W1911779644
QXPZ01000074
Bacillota
Atopobacter sp. AH10 [QXPZ]
784
697
-
Leu
TAA
[ENA]
¡û
>W1810759956
QPJV01000002
Bacillota
Vagococcus fluvialis DSM 5731 [QPJV]
459
544
+
Leu
TAA
[ENA]
¡û
>W1810759985
QPJV01000025
Bacillota
Vagococcus fluvialis DSM 5731 [QPJV]
9
94
+
Leu
TAA
[ENA]
¡û
>W1810907553
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
222901
222813
-
Leu
TAA
[ENA]
¡û
>C151104031
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
2306243
2306158
-
Leu
TAA
[Ensembl]
¡û
>C151104045
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
1702457
1702372
-
Leu
TAA
[Ensembl]
¡û
>W1510060211
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>W1510060328
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>C11112709
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1805274
1805185
-
Leu
TAA
[Ensembl]
¡û
>C11112769
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1819103
1819014
-
Leu
TAA
[Ensembl]
¡û
>W1511314665
JPUJ01000002
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
181775
181686
-
Leu
TAA
[ENA]
¡û
>W11157443
AFCC01000007
Bacillota
Lactococcus garvieae 21881 [AFCC]
37
126
+
Leu
TAA
[ENA]
¡û
>W11157491
AFCD01000005
Bacillota
Lactococcus garvieae 8831 [AFCD]
36
125
+
Leu
TAA
[ENA]
¡û
>W11162742
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4787
4876
+
Leu
TAA
[ENA]
¡û
>W121016378
AGQX01000090
Bacillota
Lactococcus garvieae TB25 [AGQX]
29045
28956
-
Leu
TAA
[ENA]
¡û
>W121016425
AGQY01000137
Bacillota
Lactococcus garvieae LG9 [AGQY]
6591
6502
-
Leu
TAA
[ENA]
¡û
>W121081188
AKFO01000004
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
92
179
+
Leu
TAA
[ENA]
¡û
>W1610032221
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
541
626
+
Leu
TAA
[ENA]
¡û
>W1610072968
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
368
283
-
Leu
TAA
[ENA]
¡û
>W1610072995
BCVN01000110
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
179
264
+
Leu
TAA
[ENA]
¡û
>W1610514196
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
543125
543040
-
Leu
TAA
[ENA]
¡û
>W1610514209
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
6881
6796
-
Leu
TAA
[ENA]
¡û
>W1710029148
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
541
626
+
Leu
TAA
[ENA]
¡û
>W1710070086
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
368
283
-
Leu
TAA
[ENA]
¡û
>W1710070113
BCVN01000110
Bacillota
Lactococcus raffinolactis NBRC 100932 [BCVN]
179
264
+
Leu
TAA
[ENA]
¡û
>W1710087123
BDOS01000001
Bacillota
Streptococcus mutans [BDOS]
19085
19170
+
Leu
TAA
[ENA]
¡û
>W1710568208
FOTJ01000023
Bacillota
Lactococcus garvieae [FOTJ]
906
993
+
Leu
TAA
[ENA]
¡û
>W1710582062
FPKS01000003
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
191
276
+
Leu
TAA
[ENA]
¡û
>W1710582091
FPKS01000025
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
8508
8423
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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