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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372643 (129 seq.)
>W1710783834
LJFZ01000033
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
93337
93411
+
Arg
CCG
[ENA]
¡û
>W1710787579
LJJX01000029
Actinomycetota
Frankia sp. CpI1-P [LJJX]
70115
70043
-
Arg
CCG
[ENA]
¡û
>W131162576
AQYZ01000007
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
7460
7388
-
Arg
CCG
[ENA]
¡û
>W131162956
AQZI01000004
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
3547
3475
-
Arg
CCG
[ENA]
¡û
>W131206151
ATFL01000014
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
456409
456335
-
Arg
CCG
[ENA]
¡û
>W1711492043
MKKB01000333
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
162550
162478
-
Arg
CCG
[ENA]
¡û
>W1711492215
MKKF01000011
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
263855
263783
-
Arg
CCG
[ENA]
¡û
>WENV180094612
MTBK01017897
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1110
1184
+
Arg
CCG
[ENA]
¡û
>WENV180110808
OAPN01007431
[OAPN] marine metagenome; 2011
750
678
-
Arg
CCG
[ENA]
¡û
>WENV180289477
OBIS01063498
[OBIS] soil metagenome; Alaskan Permafrost
61
135
+
Arg
CCG
[ENA]
¡û
>WENV180318054
OBKL01046238
[OBKL] soil metagenome; Alaskan Permafrost
51
125
+
Arg
CCG
[ENA]
¡û
>WENV180357550
OBNN01027177
[OBNN] marine metagenome; Coastal water
32
104
+
Arg
CCG
[ENA]
¡û
>WENV180377049
OBON01000015
[OBON] marine metagenome; sea water
13271
13199
-
Arg
CCG
[ENA]
¡û
>WENV180394065
OBPR01053612
[OBPR] marine metagenome; ENVO:00002042
119
191
+
Arg
CCG
[ENA]
¡û
>WENV180591873
OCOV01125799
[OCOV] marine metagenome; ENVO:01000301
42
114
+
Arg
CCG
[ENA]
¡û
>WENV017551
AACY020486457
Marine microbial communities from Global Ocean Sampling (GOS)
1318
1242
-
Arg
CCG
[ENA]
>WENV181292023
OFHD01021452
[OFHD] soil metagenome; Clay
191
264
+
Arg
CCG
[ENA]
¡û
>WENV181367243
OFPW01007944
[OFPW] freshwater metagenome; Freshwater Lake
225
297
+
Arg
CCG
[ENA]
¡û
>WENV181367405
OFQB01000429
[OFQB] freshwater metagenome; Freshwater Lake
1810
1738
-
Arg
CCG
[ENA]
¡û
>WENV181367656
OFQC01000402
[OFQC] freshwater metagenome; Freshwater Lake
1830
1902
+
Arg
CCG
[ENA]
¡û
>WENV181368179
OFQK01001342
[OFQK] freshwater metagenome; Freshwater Lake
972
1043
+
Arg
CCG
[ENA]
¡û
>WENV181368321
OFQL01000661
[OFQL] freshwater metagenome; Freshwater Lake
678
606
-
Arg
CCG
[ENA]
¡û
>WENV181368421
OFQL01003924
[OFQL] freshwater metagenome; Freshwater Lake
1129
1203
+
Arg
CCG
[ENA]
¡û
>WENV181368741
OFQN01000206
[OFQN] freshwater metagenome; Freshwater Lake
6479
6407
-
Arg
CCG
[ENA]
¡û
>WENV181369363
OFQP01000768
[OFQP] freshwater metagenome; Freshwater Lake
609
537
-
Arg
CCG
[ENA]
¡û
>WENV181369384
OFQP01001040
[OFQP] freshwater metagenome; Freshwater Lake
222
150
-
Arg
CCG
[ENA]
¡û
>WENV181369799
OFQR01000157
[OFQR] freshwater metagenome; Freshwater Lake
1375
1447
+
Arg
CCG
[ENA]
¡û
>WENV181369948
OFQR01002992
[OFQR] freshwater metagenome; Freshwater Lake
29
101
+
Arg
CCG
[ENA]
¡û
>WENV181370170
OFQS01000224
[OFQS] freshwater metagenome; Freshwater Lake
67
139
+
Arg
CCG
[ENA]
¡û
>WENV181370409
OFQS01009252
[OFQS] freshwater metagenome; Freshwater Lake
250
322
+
Arg
CCG
[ENA]
¡û
>WENV181370680
OFQT01002912
[OFQT] freshwater metagenome; Freshwater Lake
1252
1324
+
Arg
CCG
[ENA]
¡û
>WENV181376731
OFRA01000005
[OFRA] wastewater metagenome; Lake Maggiore Verbania
48346
48274
-
Arg
CCG
[ENA]
¡û
>WENV181376766
OFRA01000072
[OFRA] wastewater metagenome; Lake Maggiore Verbania
6110
6038
-
Arg
CCG
[ENA]
¡û
>WENV181379447
OFRD01001686
[OFRD] wastewater metagenome; Exp Tend CN 100WW
5763
5835
+
Arg
CCG
[ENA]
¡û
>WENV181380087
OFRD01029357
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1012
940
-
Arg
CCG
[ENA]
¡û
>WENV181384285
OFRI01000004
[OFRI] wastewater metagenome; Exp Tend VB 90WW
26423
26495
+
Arg
CCG
[ENA]
¡û
>WENV181385915
OFRL01000098
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
18192
18264
+
Arg
CCG
[ENA]
¡û
>WENV181386194
OFRL01001203
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
6229
6157
-
Arg
CCG
[ENA]
¡û
>WENV181395732
OFSB01001110
[OFSB] freshwater metagenome; Freshwater Lake
1690
1762
+
Arg
CCG
[ENA]
¡û
>WENV181399461
OFSE01033699
[OFSE] wastewater metagenome; Exp Tend VB 50WW
457
385
-
Arg
CCG
[ENA]
¡û
>WENV181399881
OFSF01000130
[OFSF] wastewater metagenome; Exp Tend VB 100WW
27937
28009
+
Arg
CCG
[ENA]
¡û
>WENV181400422
OFSF01006202
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1125
1053
-
Arg
CCG
[ENA]
¡û
>WENV181836412
OGVJ01006546
[OGVJ] freshwater metagenome; freshwater
1226
1298
+
Arg
CCG
[ENA]
¡û
>WENV181836557
OGVJ01012170
[OGVJ] freshwater metagenome; freshwater
255
183
-
Arg
CCG
[ENA]
¡û
>WENV181836907
OGVJ01047988
[OGVJ] freshwater metagenome; freshwater
368
296
-
Arg
CCG
[ENA]
¡û
>WENV181845581
OGVX01004567
[OGVX] freshwater metagenome; freshwater
609
537
-
Arg
CCG
[ENA]
¡û
>WENV181847291
OGVY01012446
[OGVY] freshwater metagenome; freshwater
244
172
-
Arg
CCG
[ENA]
¡û
>WENV181848237
OGVZ01003558
[OGVZ] freshwater metagenome; freshwater
2550
2622
+
Arg
CCG
[ENA]
¡û
>WENV181848426
OGVZ01007026
[OGVZ] freshwater metagenome; freshwater
1699
1627
-
Arg
CCG
[ENA]
¡û
>WENV181848501
OGVZ01009198
[OGVZ] freshwater metagenome; freshwater
144
72
-
Arg
CCG
[ENA]
¡û
>WENV181848758
OGVZ01023270
[OGVZ] freshwater metagenome; freshwater
508
436
-
Arg
CCG
[ENA]
¡û
>WENV181853389
OGWI01003434
[OGWI] freshwater metagenome; freshwater
820
892
+
Arg
CCG
[ENA]
¡û
>WENV181854482
OGWK01003136
[OGWK] freshwater metagenome; freshwater
1712
1784
+
Arg
CCG
[ENA]
¡û
>WENV181854520
OGWK01004704
[OGWK] freshwater metagenome; freshwater
1275
1347
+
Arg
CCG
[ENA]
¡û
>WENV181855644
OGWM01000228
[OGWM] freshwater metagenome; freshwater
2337
2409
+
Arg
CCG
[ENA]
¡û
>WENV183666410
ORJL010548685
[ORJL] groundwater metagenome; groundwater
1058
1130
+
Arg
CCG
[ENA]
¡û
>WENV170551584
CXWJ01013653
[CXWJ] wastewater metagenome; activated sludge
14733
14807
+
Arg
CCG
[ENA]
¡û
>WENV170572000
FLOH01000439
[FLOH] marine metagenome; water
14651
14579
-
Arg
CCG
[ENA]
¡û
>WENV170621029
FUWD013046879
[FUWD] metagenome; unknown
1383
1455
+
Arg
CCG
[ENA]
¡û
>WENV170624653
FUWD013184666
[FUWD] metagenome; unknown
9383
9311
-
Arg
CCG
[ENA]
¡û
>WENV170624654
FUWD013184667
[FUWD] metagenome; unknown
73
1
-
Arg
CCG
[ENA]
¡û
>WENV170629189
FUWD013263703
[FUWD] metagenome; unknown
1383
1455
+
Arg
CCG
[ENA]
¡û
>WENV170632935
FUWD013389013
[FUWD] metagenome; unknown
9383
9311
-
Arg
CCG
[ENA]
¡û
>WENV170632936
FUWD013389014
[FUWD] metagenome; unknown
73
1
-
Arg
CCG
[ENA]
¡û
>WENV170645488
JNSK01000007
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
55186
55112
-
Arg
CCG
[ENA]
¡û
>WENV170645498
JNSK01000019
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2147
2221
+
Arg
CCG
[ENA]
¡û
>WENV170645502
JNSK01000021
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
19207
19279
+
Arg
CCG
[ENA]
¡û
>WENV170645503
JNSK01000024
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16751
16823
+
Arg
CCG
[ENA]
¡û
>WENV170719031
LSQX01099928
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
31078
31004
-
Arg
CCG
[ENA]
¡û
>WENV170979524
MTKZ01095218
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
620
545
-
Arg
CCG
[ENA]
¡û
>C181018707
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
657672
657600
-
Arg
CCG
-
¡û
>C181018744
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
690760
690688
-
Arg
CCG
-
¡û
>C181018780
CP015606
Actinomycetota
Actinobacteria bacterium IMCC26077 [CP015606]
697250
697177
-
Arg
CCG
-
¡û
>C181020852
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1066413
1066485
+
Arg
CCG
-
¡û
>C181021105
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1043497
1043569
+
Arg
CCG
-
¡û
>C181021261
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
990463
990535
+
Arg
CCG
-
¡û
>C181021374
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1015247
1015319
+
Arg
CCG
-
¡û
>C191158402
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
758336
758264
-
Arg
CCG
-
¡û
>WENV024342
AACY020798256
Marine microbial communities from Global Ocean Sampling (GOS)
339
413
+
Arg
CCG
[ENA]
>WENV025057
AACY020857630
Marine microbial communities from Global Ocean Sampling (GOS)
345
271
-
Arg
CCG
[ENA]
>WENV026174
AACY020945877
Marine microbial communities from Global Ocean Sampling (GOS)
478
404
-
Arg
CCG
[ENA]
>W2010402567
FUKQ01000032
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
185440
185514
+
Arg
CCG
[ENA]
¡û
>W2010465944
JAAGLV010000012
Actinomycetota
Streptomyces sp. SID13031 [JAAGLV]
86074
86002
-
Arg
CCG
[ENA]
¡û
>W2010515235
JAAMPJ010000001
Actinomycetota
Lentzea sp. NEAU-D13 [JAAMPJ]
739148
739222
+
Arg
CCG
[ENA]
¡û
>W2010570221
JAATVX010000001
Actinomycetota
Planosporangium mesophilum TBRC 2212 [JAATVX]
582935
582861
-
Arg
CCG
[ENA]
¡û
>W2010668700
JACBZT010000001
Actinomycetota
Geodermatophilus daqingensis DSM 104001 [JACBZT]
759689
759763
+
Arg
CCG
[ENA]
¡û
>W2010671483
JACCBU010000001
Actinomycetota
Microlunatus parietis DSM 22083 [JACCBU]
6902614
6902540
-
Arg
CCG
[ENA]
¡û
>W2010691721
JACGWT010000005
Actinomycetota
Friedmanniella endophytica DSM 100723 [JACGWT]
260176
260248
+
Arg
CCG
[ENA]
¡û
>W2010710506
JACHMY010000001
Actinomycetota
Kribbella italica DSM 28967 [JACHMY]
3844285
3844357
+
Arg
CCG
[ENA]
¡û
>W2010740378
JACJID010000002
Actinomycetota
Kutzneria viridogrisea DSM 43850 [JACJID]
1629184
1629256
+
Arg
CCG
[ENA]
¡û
>WENV031488
AACY021371963
Marine microbial communities from Global Ocean Sampling (GOS)
303
377
+
Arg
CCG
[ENA]
>WENV032071
AACY021417345
Marine microbial communities from Global Ocean Sampling (GOS)
644
568
-
Arg
CCG
[ENA]
>W2110667451
JAHZSU010000001
Actinomycetota
Ornithinimicrobium sp. Arc0846-15 [JAHZSU]
496343
496415
+
Arg
CCG
[ENA]
¡û
>C201044604
CP029558
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP029558]
657672
657600
-
Arg
CCG
-
¡û
>C211197303
CP064985
Actinomycetota
Austwickia sp. [CP064985]
412004
412078
+
Arg
CCG
-
¡û
>C231413103
CP099489
Actinomycetota
Ornithinimicrobium sp. HY1793 [CP099489]
3737037
3736965
-
Arg
CCG
-
¡û
>C231555857
CP114065
Actinomycetota
Kribbella sp. CA-293567 [CP114065]
2364903
2364831
-
Arg
CCG
-
¡û
>C241012906
AP028056
Actinomycetota
Brooklawnia propionicigenes SH051 [AP028056]
3042452
3042380
-
Arg
CCG
-
¡û
>C241082167
CP043808
Actinomycetota
Serinicoccus marinus DSM 15273 [CP043808]
632839
632767
-
Arg
CCG
-
¡û
>C241201834
CP107881
Actinomycetota
Kribbella sp. NBC_00482 [CP107881]
8895693
8895765
+
Arg
CCG
-
¡û
>C241210332
CP108487
Actinomycetota
Kribbella sp. NBC_01245 [CP108487]
8112529
8112456
-
Arg
CCG
-
¡û
>W2130039089
JAHZQZ010000289
Actinomycetota
Microbacterium sp. HD4P20 [JAHZQZ]
439
367
-
Arg
CCG
[ENA]
¡û
>WENV040581
AACY022093733
Marine microbial communities from Global Ocean Sampling (GOS)
606
532
-
Arg
CCG
[ENA]
>WENV057562
AACY023298994
Marine microbial communities from Global Ocean Sampling (GOS)
636
562
-
Arg
CCG
[ENA]
>WENV058211
AACY023321203
Marine microbial communities from Global Ocean Sampling (GOS)
1419
1493
+
Arg
CCG
[ENA]
>WENV058351
AACY023325920
Marine microbial communities from Global Ocean Sampling (GOS)
590
664
+
Arg
CCG
[ENA]
>WENV058902
AACY023346402
Marine microbial communities from Global Ocean Sampling (GOS)
1038
1112
+
Arg
CCG
[ENA]
>WENV059108
AACY023353829
Marine microbial communities from Global Ocean Sampling (GOS)
790
716
-
Arg
CCG
[ENA]
>WENV061332
AACY023429657
Marine microbial communities from Global Ocean Sampling (GOS)
1232
1306
+
Arg
CCG
[ENA]
>WENV061802
AACY023440944
Marine microbial communities from Global Ocean Sampling (GOS)
613
687
+
Arg
CCG
[ENA]
>WENV061983
AACY023445962
Marine microbial communities from Global Ocean Sampling (GOS)
341
415
+
Arg
CCG
[ENA]
>W1610625518
LIAS01000065
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
396
324
-
Arg
CCG
[ENA]
¡û
>W1610625537
LIAT01000010
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120813-bin23 [LIAT]
1605
1533
-
Arg
CCG
[ENA]
¡û
>W1610625563
LIAU01000086
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120820-bin50 [LIAU]
847
775
-
Arg
CCG
[ENA]
¡û
>W1610625635
LIAW01000310
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121001-bin67 [LIAW]
369
297
-
Arg
CCG
[ENA]
¡û
>W1610625639
LIAX01000001
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121220-bin52 [LIAX]
19451
19379
-
Arg
CCG
[ENA]
¡û
>W1610626136
LIBS01000117
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120920-bin34 [LIBS]
763
691
-
Arg
CCG
[ENA]
¡û
>W1610627258
LIDL01000209
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120507-bin38 [LIDL]
272
344
+
Arg
CCG
[ENA]
¡û
>W1610648342
LJFZ01000033
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
93337
93411
+
Arg
CCG
[ENA]
¡û
>WENV074937
AACY024005034
Marine microbial communities from Global Ocean Sampling (GOS)
81
7
-
Arg
CCG
[ENA]
>WENV074960
AACY024006374
Marine microbial communities from Global Ocean Sampling (GOS)
533
607
+
Arg
CCG
[ENA]
>W1710589942
FRAP01000003
Actinomycetota
Pseudonocardia thermophila [FRAP]
230380
230306
-
Arg
CCG
[ENA]
¡û
>W1710756645
LIAS01000065
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
396
324
-
Arg
CCG
[ENA]
¡û
>W1710756664
LIAT01000010
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120813-bin23 [LIAT]
1605
1533
-
Arg
CCG
[ENA]
¡û
>W1710756690
LIAU01000086
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120820-bin50 [LIAU]
847
775
-
Arg
CCG
[ENA]
¡û
>W1710756762
LIAW01000310
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121001-bin67 [LIAW]
369
297
-
Arg
CCG
[ENA]
¡û
>W1710756766
LIAX01000001
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121220-bin52 [LIAX]
19451
19379
-
Arg
CCG
[ENA]
¡û
>W1710757263
LIBS01000117
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120920-bin34 [LIBS]
763
691
-
Arg
CCG
[ENA]
¡û
>W1710758385
LIDL01000209
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120507-bin38 [LIDL]
272
344
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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