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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37304 (126 seq.)
>W1710802995
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
140518
140430
-
Leu
TAA
[ENA]
¡û
>W1710803006
LJYG01000006
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
41328
41240
-
Leu
TAA
[ENA]
¡û
>W1710877767
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
187362
187450
+
Leu
TAA
[ENA]
¡û
>W1711067403
LSEF01000061
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
180107
180019
-
Leu
TAA
[ENA]
¡û
>W1711072974
LSIC01000020
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
34981
34893
-
Leu
TAA
[ENA]
¡û
>W1711124824
LUKO01000219
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
57883
57971
+
Leu
TAA
[ENA]
¡û
>W1711129606
LUUB01000078
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
106032
106120
+
Leu
TAA
[ENA]
¡û
>W1711138875
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
262473
262385
-
Leu
TAA
[ENA]
¡û
>W1711180104
LWIG01000004
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
47691
47603
-
Leu
TAA
[ENA]
¡û
>W1711180134
LWIG01000060
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
105304
105216
-
Leu
TAA
[ENA]
¡û
>W1711180136
LWIG01000066
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
757
845
+
Leu
TAA
[ENA]
¡û
>W131164994
ARBF01000080
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
38478
38390
-
Leu
TAA
[ENA]
¡û
>W131167476
ARDH01000017
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
33352
33264
-
Leu
TAA
[ENA]
¡û
>W131170241
ARFJ01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
41314
41226
-
Leu
TAA
[ENA]
¡û
>W131217317
ATWP01000009
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
90612
90700
+
Leu
TAA
[ENA]
¡û
>W131227276
AUFA01000010
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
46440
46528
+
Leu
TAA
[ENA]
¡û
>W131228692
AUGD01000009
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
90612
90700
+
Leu
TAA
[ENA]
¡û
>W1711928302
NAEX01000179
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
97310
97222
-
Leu
TAA
[ENA]
¡û
>W1711928336
NAEY01000154
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
25056
25144
+
Leu
TAA
[ENA]
¡û
>W1711928379
NAEZ01000161
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
97273
97185
-
Leu
TAA
[ENA]
¡û
>W1711928441
NAFA01000197
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
97331
97243
-
Leu
TAA
[ENA]
¡û
>W1711928480
NAFB01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
29104
29192
+
Leu
TAA
[ENA]
¡û
>W1711928548
NAFC01000177
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
241513
241425
-
Leu
TAA
[ENA]
¡û
>W1711928594
NAFD01000192
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
97324
97236
-
Leu
TAA
[ENA]
¡û
>W1711928632
NAFE01000222
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
256907
256995
+
Leu
TAA
[ENA]
¡û
>W1711928659
NAFF01000091
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
25012
25100
+
Leu
TAA
[ENA]
¡û
>W1711928730
NAFG01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
97488
97400
-
Leu
TAA
[ENA]
¡û
>W1711928781
NAFH01000176
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
97402
97314
-
Leu
TAA
[ENA]
¡û
>W1711928830
NAFI01000187
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
256822
256910
+
Leu
TAA
[ENA]
¡û
>W1711928860
NAFJ01000141
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
24939
25027
+
Leu
TAA
[ENA]
¡û
>W1711928912
NAFK01000170
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
124605
124693
+
Leu
TAA
[ENA]
¡û
>W1711928954
NAFL01000255
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
39406
39318
-
Leu
TAA
[ENA]
¡û
>W1712049629
NFUH01000462
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
5959
5871
-
Leu
TAA
[ENA]
¡û
>C171021123
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
3974050
3973962
-
Leu
TAA
-
¡û
>C171064697
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4515726
4515638
-
Leu
TAA
-
¡û
>C003060
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
6149083
6149171
+
Leu
TAA
[Ensembl]
¡û
>W141001308
ADOU01000079
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
7326
7414
+
Leu
TAA
[ENA]
¡û
>W141150050
AXAB01000044
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
37116
37028
-
Leu
TAA
[ENA]
¡û
>W141150127
AXAD01000004
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
282219
282307
+
Leu
TAA
[ENA]
¡û
>W141150234
AXAF01000009
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
302838
302926
+
Leu
TAA
[ENA]
¡û
>W141150261
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
43053
42965
-
Leu
TAA
[ENA]
¡û
>W141151013
AXAS01000050
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
36570
36482
-
Leu
TAA
[ENA]
¡û
>W141151039
AXAT01000017
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
6182
6270
+
Leu
TAA
[ENA]
¡û
>W141151154
AXAV01000019
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
136416
136504
+
Leu
TAA
[ENA]
¡û
>W141151256
AXAX01000025
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
19733
19821
+
Leu
TAA
[ENA]
¡û
>W141151307
AXAY01000042
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
11823
11911
+
Leu
TAA
[ENA]
¡û
>W141151346
AXAZ01000062
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
6233
6321
+
Leu
TAA
[ENA]
¡û
>W141151479
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
416935
416847
-
Leu
TAA
[ENA]
¡û
>W141168844
AXVG01000014
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
590119
590207
+
Leu
TAA
[ENA]
¡û
>W141169200
AXVP01000041
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
37460
37372
-
Leu
TAA
[ENA]
¡û
>W141220429
AZXU01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
637521
637609
+
Leu
TAA
[ENA]
¡û
>W141233899
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
627991
628079
+
Leu
TAA
[ENA]
¡û
>W141275964
JADK01000009
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
229075
228987
-
Leu
TAA
[ENA]
¡û
>WENV170706132
LNAP01001273
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
32316
32228
-
Leu
TAA
[ENA]
¢þ
>WENV170706639
LNAP01005019
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1476
1564
+
Leu
TAA
[ENA]
¢þ
>C181178168
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
5530590
5530502
-
Leu
TAA
-
¡û
>C181178194
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
4252430
4252518
+
Leu
TAA
-
¡û
>C181178238
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
4066309
4066397
+
Leu
TAA
-
¡û
>C181203877
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3276299
3276211
-
Leu
TAA
-
¡û
>C191071697
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
3292224
3292136
-
Leu
TAA
-
¡û
>C191092030
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
6084721
6084809
+
Leu
TAA
-
¡û
>C191186633
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
3375193
3375281
+
Leu
TAA
-
¡û
>W1910183062
BJNK01000002
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
39672
39584
-
Leu
TAA
[ENA]
¡û
>W1910598268
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
3515047
3514959
-
Leu
TAA
[ENA]
¡û
>W1910598936
LBJC01000019
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
216161
216073
-
Leu
TAA
[ENA]
¡û
>W1910599052
LBJQ01000087
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
216079
215991
-
Leu
TAA
[ENA]
¡û
>W1910611562
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
7131714
7131626
-
Leu
TAA
[ENA]
¡û
>W1910840256
MZXW01000013
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
88172
88260
+
Leu
TAA
[ENA]
¡û
>W1911409805
NWTE01000017
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
120273
120361
+
Leu
TAA
[ENA]
¡û
>W1911409830
NWTF01000006
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
111525
111437
-
Leu
TAA
[ENA]
¡û
>W1911409995
NWTI01000002
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
240489
240401
-
Leu
TAA
[ENA]
¡û
>W1911817871
QZMV01000005
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
33779
33691
-
Leu
TAA
[ENA]
¡û
>W1810104407
PGVG01000004
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
240807
240719
-
Leu
TAA
[ENA]
¡û
>W1810289866
PTFE01000036
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
44259
44171
-
Leu
TAA
[ENA]
¡û
>W1810400165
PYFW01000007
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
266838
266750
-
Leu
TAA
[ENA]
¡û
>W1810400213
PYFX01000007
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
233005
232917
-
Leu
TAA
[ENA]
¡û
>C151066562
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4301543
4301455
-
Leu
TAA
[Ensembl]
¡û
>W1510973738
JGCL01000010
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
162585
162497
-
Leu
TAA
[ENA]
¡û
>W1511353638
JRPN01000024
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
248927
249015
+
Leu
TAA
[ENA]
¡û
>W1511533263
JYMR01000010
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
21092
21004
-
Leu
TAA
[ENA]
¡û
>W1511533333
JYMS01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
535961
536049
+
Leu
TAA
[ENA]
¡û
>W1511706691
LGUJ01000009
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
21294
21382
+
Leu
TAA
[ENA]
¡û
>C121000492
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4278481
4278393
-
Leu
TAA
[Ensembl]
¡û
>C121000750
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
2794362
2794274
-
Leu
TAA
[Ensembl]
¡û
>C161001014
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
310807
310895
+
Leu
TAA
-
¡û
>C161017416
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1326602
1326514
-
Leu
TAA
[Ensembl]
¡û
>C161034232
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
5468741
5468829
+
Leu
TAA
-
¡û
>C161107857
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6227802
6227714
-
Leu
TAA
-
¡û
>C161107952
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4021932
4021844
-
Leu
TAA
-
¡û
>W121036203
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
5285805
5285893
+
Leu
TAA
[ENA]
¡û
>W121036450
AHMB01000064
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
302472
302384
-
Leu
TAA
[ENA]
¡û
>W121065293
AJPX01000323
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
3428
3340
-
Leu
TAA
[ENA]
¡û
>W121065359
AJPY01000566
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
3459
3371
-
Leu
TAA
[ENA]
¡û
>W121065415
AJPZ01000470
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
789
877
+
Leu
TAA
[ENA]
¡û
>W121065463
AJQA01000377
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
19854
19766
-
Leu
TAA
[ENA]
¡û
>W121065557
AJQC01000706
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
28060
27972
-
Leu
TAA
[ENA]
¡û
>W121065580
AJQD01000324
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
7416
7504
+
Leu
TAA
[ENA]
¡û
>W121065610
AJQE01000060
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
32888
32976
+
Leu
TAA
[ENA]
¡û
>W121065682
AJQF01000351
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
40973
41061
+
Leu
TAA
[ENA]
¡û
>W121065747
AJQG01000315
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
40982
41070
+
Leu
TAA
[ENA]
¡û
>W121065777
AJQH01000215
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
40662
40750
+
Leu
TAA
[ENA]
¡û
>W121065839
AJQI01000425
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
515
603
+
Leu
TAA
[ENA]
¡û
>W121065890
AJQJ01000458
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
10502
10590
+
Leu
TAA
[ENA]
¡û
>W121065934
AJQK01000291
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
45678
45766
+
Leu
TAA
[ENA]
¡û
>W121085089
AKIY01000248
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
23019
22931
-
Leu
TAA
[ENA]
¡û
>W1610514449
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
35955
35867
-
Leu
TAA
[ENA]
¡û
>W1610514634
FMAI01000032
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
44310
44222
-
Leu
TAA
[ENA]
¡û
>W1610549139
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1687799
1687887
+
Leu
TAA
[ENA]
¡û
>W1610666852
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
140518
140430
-
Leu
TAA
[ENA]
¡û
>W1610666863
LJYG01000006
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
41328
41240
-
Leu
TAA
[ENA]
¡û
>W1610740113
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
187362
187450
+
Leu
TAA
[ENA]
¡û
>W1610907973
LSEF01000061
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
180107
180019
-
Leu
TAA
[ENA]
¡û
>W1610912234
LSIC01000020
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
34981
34893
-
Leu
TAA
[ENA]
¡û
>W1610935796
LUKO01000219
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
57883
57971
+
Leu
TAA
[ENA]
¡û
>W1610940679
LUUB01000078
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
106032
106120
+
Leu
TAA
[ENA]
¡û
>W1610949883
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
262473
262385
-
Leu
TAA
[ENA]
¡û
>W1710500139
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
35955
35867
-
Leu
TAA
[ENA]
¡û
>W1710500324
FMAI01000032
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
44310
44222
-
Leu
TAA
[ENA]
¡û
>W1710546011
FOBX01000006
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
277827
277739
-
Leu
TAA
[ENA]
¡û
>W1710564286
FOQJ01000012
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
229025
229113
+
Leu
TAA
[ENA]
¡û
>W1710564419
FOQM01000007
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
205358
205446
+
Leu
TAA
[ENA]
¡û
>W1710569814
FOUS01000009
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
320656
320568
-
Leu
TAA
[ENA]
¡û
>W1710571308
FOVU01000004
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
221609
221521
-
Leu
TAA
[ENA]
¡û
>W1710578508
FPBQ01000003
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
482778
482690
-
Leu
TAA
[ENA]
¡û
>W1710652713
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1687799
1687887
+
Leu
TAA
[ENA]
¡û
>W1710735708
LGHM01000165
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
9630
9718
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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