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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373556 (31 seq.)
>WENV180287140
OBIK01000009
[OBIK] hydrothermal vent metagenome; sea water
11002
11076
+
Gln
TTG
[ENA]
¡û
>WENV180287171
OBIK01000463
[OBIK] hydrothermal vent metagenome; sea water
251
325
+
Gln
TTG
[ENA]
¡û
>WENV180581218
OCMH01063020
[OCMH] metagenome; diffuse fluid
154
80
-
Gln
TTG
[ENA]
¡û
>WENV180581726
OCMK01055302
[OCMK] metagenome; diffuse fluid
68
142
+
Gln
TTG
[ENA]
¡û
>WENV180634320
OCRB01001528
[OCRB] metagenome; diffuse fluid
1348
1422
+
Gln
TTG
[ENA]
¡û
>WENV180648331
OCSI01169326
[OCSI] metagenome; diffuse fluid
173
99
-
Gln
TTG
[ENA]
¡û
>WENV181209225
OFBD01016500
[OFBD] metagenome; hydrothermal vent
144
70
-
Gln
TTG
[ENA]
¡û
>WENV181211493
OFBK01012695
[OFBK] metagenome; hydrothermal vent
115
41
-
Gln
TTG
[ENA]
¡û
>WENV181228224
OFDO01003928
[OFDO] metagenome; hydrothermal vent
303
229
-
Gln
TTG
[ENA]
¡û
>C08010648
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
1487906
1487980
+
Gln
TTG
[Ensembl]
¡û
>WENV170000965
AGBJ01000070
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
4438
4512
+
Gln
TTG
[ENA]
¡û
>WENV170572461
FLOH01000894
[FLOH] marine metagenome; water
26940
27014
+
Gln
TTG
[ENA]
¡û
>WENV170575515
FPHC01000013
[FPHC] hydrothermal vent metagenome genome assembly, contig: NODE_46.; water
19943
20017
+
Gln
TTG
[ENA]
¡û
>WENV170575562
FPHD01000058
[FPHD] hydrothermal vent metagenome genome assembly, contig: NODE_13.; water
25933
25859
-
Gln
TTG
[ENA]
¡û
>WENV170575572
FPHE01000069
[FPHE] hydrothermal vent metagenome genome assembly, contig: NODE_55.; water
7619
7693
+
Gln
TTG
[ENA]
¡û
>WENV170575626
FPHG01000043
[FPHG] hydrothermal vent metagenome genome assembly, contig: NODE_9.; water
1649
1575
-
Gln
TTG
[ENA]
¡û
>WENV170576147
FPKX01000059
[FPKX] hydrothermal vent metagenome; water
44742
44668
-
Gln
TTG
[ENA]
¡û
>WENV170692888
LGOV01041927
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
67
141
+
Gln
TTG
[ENA]
¡û
>WENV170695071
LGVE01040466
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
75
1
-
Gln
TTG
[ENA]
¡û
>W09111620
ABXD01000018
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
52036
51962
-
Gln
TTG
[ENA]
¡û
>W09111622
ABXD01000018
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
48342
48268
-
Gln
TTG
[ENA]
¡û
>C151079563
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
989412
989338
-
Gln
TTG
[Ensembl]
¡û
>W2110070322
BPFJ01000001
Campylobacterota
Sulfurovum sp. TSL6 [BPFJ]
620554
620628
+
Gln
TTG
[ENA]
¡û
>C211052473
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
1332035
1332109
+
Gln
TTG
-
¡û
>C211065984
CP046072
Campylobacterota
Sulfurimonas sp. H1576 [CP046072]
1468076
1468150
+
Gln
TTG
-
¡û
>C231194017
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
1370439
1370513
+
Gln
TTG
-
¡û
>C241043004
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
975344
975270
-
Gln
TTG
-
¡û
>C11119350
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
1014733
1014659
-
Gln
TTG
[Ensembl]
¡û
>WENV055983
AACY023245522
Marine microbial communities from Global Ocean Sampling (GOS)
371
297
-
Gln
TTG
[ENA]
>W121004879
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
2591298
2591224
-
Gln
TTG
[ENA]
¡û
>W121004881
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
2587604
2587530
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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