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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373590 (18 seq.)
>W1711406003
MGEY01000014
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYA2_FULL_40_9 [MGEY]
4634
4708
+
Gly
GCC
[ENA]
¡û
>W1711406073
MGFA01000008
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10 [MGFA]
124
50
-
Gly
GCC
[ENA]
¡û
>W1711406135
MGFC01000017
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_41_18 [MGFC]
4613
4687
+
Gly
GCC
[ENA]
¡û
>W1711406224
MGFE01000023
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_57_15 [MGFE]
31850
31776
-
Gly
GCC
[ENA]
¡û
>W1711406247
MGFF01000008
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYC12_FULL_57_11 [MGFF]
31797
31723
-
Gly
GCC
[ENA]
¡û
>WENV180091883
MPMF02225951
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
140
214
+
Gly
GCC
[ENA]
¡û
>WENV170209073
CEPV01031202
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
136
-
Gly
GCC
[ENA]
¡û
>W2110080130
CAIJUS010000072
Unclassified
Candidatus Uhrbacteria bacterium [CAIJUS]
8910
8984
+
Gly
GCC
[ENA]
¡û
>W2110080450
CAIKCK010000027
Unclassified
Candidatus Uhrbacteria bacterium [CAIKCK]
190
116
-
Gly
GCC
[ENA]
¡û
>W2110081319
CAILGN010000089
Unclassified
Candidatus Uhrbacteria bacterium [CAILGN]
9107
9181
+
Gly
GCC
[ENA]
¡û
>W2110081537
CAILOM010000073
Unclassified
Candidatus Uhrbacteria bacterium [CAILOM]
8910
8984
+
Gly
GCC
[ENA]
¡û
>W2110081691
CAILRV010000036
Unclassified
Candidatus Uhrbacteria bacterium [CAILRV]
9713
9787
+
Gly
GCC
[ENA]
¡û
>W2110081714
CAILRV010000076
Unclassified
Candidatus Uhrbacteria bacterium [CAILRV]
16386
16312
-
Gly
GCC
[ENA]
¡û
>W2110082547
CAIMOJ010000067
Unclassified
Candidatus Uhrbacteria bacterium [CAIMOJ]
3122
3048
-
Gly
GCC
[ENA]
¡û
>W2110083653
CAIOEK010000044
Unclassified
Candidatus Uhrbacteria bacterium [CAIOEK]
9107
9181
+
Gly
GCC
[ENA]
¡û
>W2110083676
CAIOEK010000070
Unclassified
Candidatus Uhrbacteria bacterium [CAIOEK]
64
138
+
Gly
GCC
[ENA]
¡û
>W1511604386
LBYS01000040
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWF2_40_263 bacterium GW2011_GWF2_40_263 [LBYS]
4744
4670
-
Gly
GCC
[ENA]
¡û
>WENV057354
AACY023292404
Marine microbial communities from Global Ocean Sampling (GOS)
135
61
-
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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