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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.373655 (22 seq.)
>C171100131
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
4381773
4381699
-
Gln
TTG
-
¡û
>C171118520
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
4167460
4167386
-
Gln
TTG
-
¡û
>WENV180015682
FSSS01000074
[FSSS] metagenome; soil
1202
1276
+
Gln
TTG
[ENA]
¡û
>WENV180029013
FTJI01003408
[FTJI] metagenome; soil
2970
3044
+
Gln
TTG
[ENA]
¡û
>WENV180030805
FTJN01078082
[FTJN] metagenome; soil
372
446
+
Gln
TTG
[ENA]
¡û
>WENV180034537
FTKR01003501
[FTKR] metagenome; soil
2970
3044
+
Gln
TTG
[ENA]
¡û
>WENV180040771
LLBZ010013790
[LLBZ] soil metagenome; soil from tomato rhizosphere
625
551
-
Gln
TTG
[ENA]
¡û
>WENV181856954
OGWN01031057
[OGWN] freshwater metagenome; freshwater
388
316
-
Gln
TTG
[ENA]
¡û
>C08003251
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
783254
783183
-
Gln
TTG
[Ensembl]
¡û
>W1910911035
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1622647
1622721
+
Gln
TTG
[ENA]
¡û
>W2010965040
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1622647
1622721
+
Gln
TTG
[ENA]
¡û
>W2011652286
SNZQ01000001
Gammaproteobacteria
Cellvibrio sp. YR554 [SNZQ]
205855
205929
+
Gln
TTG
[ENA]
¡û
>W2110049925
BMYZ01000002
Gammaproteobacteria
Cellvibrio zantedeschiae KCTC 32239 [BMYZ]
542230
542156
-
Gln
TTG
[ENA]
¡û
>C201049192
CP031727
Gammaproteobacteria
Cellvibrio sp. KY-YJ-3 [CP031727]
83819
83893
+
Gln
TTG
-
¡û
>C201049247
CP031728
Gammaproteobacteria
Cellvibrio sp. KY-GH-1 [CP031728]
2827463
2827537
+
Gln
TTG
-
¡û
>W1510018785
BBUL01000091
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
214729
214655
-
Gln
TTG
[ENA]
¡û
>W2110757500
PRDL01000001
Gammaproteobacteria
Cellvibrio polysaccharolyticus Ka43 [PRDL]
886425
886351
-
Gln
TTG
[ENA]
¡û
>W1511548656
JZSC01000007
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1219375
1219301
-
Gln
TTG
[ENA]
¡û
>WENV058336
AACY023325031
Marine microbial communities from Global Ocean Sampling (GOS)
1129
1205
+
Gln
TTG
[ENA]
>W1610005713
ALBT01000023
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
313842
313916
+
Gln
TTG
[ENA]
¡û
>W121045198
AICM01000008
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
139128
139054
-
Gln
TTG
[ENA]
¡û
>W1710005474
ALBT01000023
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
313842
313916
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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