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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374084 (44 seq.)
>W1710892971
LNEH01000101
Verrucomicrobiota
Verrucomicrobia bacterium Ga0077533 [LNEH]
4849
4775
-
Thr
TGT
[ENA]
¡û
>W1711089387
LSZP01000003
Verrucomicrobiota
Cephaloticoccus capnophilus [LSZP]
7275
7201
-
Thr
TGT
[ENA]
¡û
>W1711089447
LSZQ01000034
Verrucomicrobiota
Cephaloticoccus primus [LSZQ]
15415
15489
+
Thr
TGT
[ENA]
¡û
>W1711228701
LXWT01000076
Verrucomicrobiota
Opitutaceae bacterium TAV3 [LXWT]
57859
57785
-
Thr
TGT
[ENA]
¡û
>W1711228743
LXWU01000078
Verrucomicrobiota
Opitutaceae bacterium TAV4 [LXWU]
57986
57912
-
Thr
TGT
[ENA]
¡û
>C171046066
CP016094
Verrucomicrobiota
Lacunisphaera limnophila IG16b [CP016094]
4040391
4040465
+
Thr
TGT
-
¡û
>WENV180021084
FTDT01000088
[FTDT] metagenome; soil
7442
7368
-
Thr
TGT
[ENA]
¡û
>WENV180027768
FTIZ01070925
[FTIZ] metagenome; soil
511
585
+
Thr
TGT
[ENA]
¡û
>WENV180038735
LLBY010004275
[LLBY] soil metagenome; soil from tomato rhizosphere
2059
2133
+
Thr
TGT
[ENA]
¡û
>WENV180272759
OBEQ012414021
[OBEQ] groundwater metagenome; groundwater
152
226
+
Thr
TGT
[ENA]
¡û
>WENV180304183
OBJH01098837
[OBJH] soil metagenome; soil
165
239
+
Thr
TGT
[ENA]
¡û
>WENV180354324
OBLQ011610059
[OBLQ] soil metagenome; soil
97
171
+
Thr
TGT
[ENA]
¡û
>WENV181416057
OGCL01046288
[OGCL] hot springs metagenome; Hot spring water
672
598
-
Thr
TGT
[ENA]
¡û
>W08001874
ABEA01000050
Verrucomicrobiota
Geminisphaera colitermitum TAV2 [ABEA]
17920
17849
-
Thr
TGT
[ENA]
¡û
>WENV181841993
OGVS01021406
[OGVS] freshwater metagenome; freshwater
263
337
+
Thr
TGT
[ENA]
¡û
>C08007100
CP001032
Verrucomicrobiota
Opitutus terrae PB90-1 [CP001032]
3038462
3038391
-
Thr
TGT
[Ensembl]
¡û
>WENV183673081
ORJL011239032
[ORJL] groundwater metagenome; groundwater
292
366
+
Thr
TGT
[ENA]
¡û
>WENV183679295
ORMF010041773
[ORMF] groundwater metagenome; groundwater
2661
2587
-
Thr
TGT
[ENA]
¡û
>WENV183686839
ORMF011059058
[ORMF] groundwater metagenome; groundwater
619
693
+
Thr
TGT
[ENA]
¡û
>WENV183693858
ORMF012151497
[ORMF] groundwater metagenome; groundwater
925
851
-
Thr
TGT
[ENA]
¡û
>WENV183697437
OUNJ010896177
[OUNJ] metagenome; soil
334
260
-
Thr
TGT
[ENA]
¡û
>WENV183750140
PPFU01262522
[PPFU] hypolithon metagenome; Antarctic Hypolithon
474
400
-
Thr
TGT
[ENA]
¡û
>WENV170535908
CEWP01122728
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8013
7939
-
Thr
TGT
[ENA]
¡û
>WENV170556445
CXWL01008708
[CXWL] groundwater metagenome; biofilm material
237
163
-
Thr
TGT
[ENA]
¡û
>WENV170565478
FJVV01000544
[FJVV] metagenome; soil
9765
9691
-
Thr
TGT
[ENA]
¡û
>WENV170708159
LNAP01054100
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
609
535
-
Thr
TGT
[ENA]
¡û
>WENV170713260
LNFM01027392
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4901
4975
+
Thr
TGT
[ENA]
¡û
>C181079117
CP023344
Verrucomicrobiota
Nibricoccus aquaticus HZ-65 [CP023344]
307319
307393
+
Thr
TGT
-
¡û
>W1910744824
MIDS01000159
Verrucomicrobiota
Verrucomicrobia bacterium RIFCSPLOWO2_12_FULL_64_8 [MIDS]
1305
1231
-
Thr
TGT
[ENA]
¡û
>W1810487950
QAYY01000009
Verrucomicrobiota
Opitutaceae bacterium EW11 [QAYY]
87777
87851
+
Thr
TGT
[ENA]
¡û
>C151016735
CP007053
Verrucomicrobiota
Opitutaceae bacterium TAV5 [CP007053]
1516634
1516708
+
Thr
TGT
[Ensembl]
¡û
>C151078877
CP011265
Verrucomicrobiota
Verrucomicrobia bacterium IMCC26134 [CP011265]
155210
155136
-
Thr
TGT
[Ensembl]
¡û
>W2010878256
MIDS01000159
Verrucomicrobiota
Verrucomicrobia bacterium RIFCSPLOWO2_12_FULL_64_8 [MIDS]
1305
1231
-
Thr
TGT
[ENA]
¡û
>W2011544650
SDHX01000001
Verrucomicrobiota
Lacunisphaera sp. TWA-58 [SDHX]
1492354
1492280
-
Thr
TGT
[ENA]
¡û
>W2012088396
VMBG01000001
Verrucomicrobiota
Opitutaceae bacterium 53C-WASEF [VMBG]
1654903
1654977
+
Thr
TGT
[ENA]
¡û
>W2110087219
CAITMD010000409
Verrucomicrobiota
Akkermansiaceae bacterium [CAITMD]
394
468
+
Thr
TGT
[ENA]
¡û
>W121010432
AGJF01000004
Verrucomicrobiota
Opitutaceae bacterium TAV5 [AGJF]
837625
837699
+
Thr
TGT
[ENA]
¡û
>W121034589
AHKS02000038
Verrucomicrobiota
Opitutaceae bacterium TAV1 [AHKS]
239163
239089
-
Thr
TGT
[ENA]
¡û
>WENV074459
AACY023976093
Marine microbial communities from Global Ocean Sampling (GOS)
66
142
+
Thr
TGT
[ENA]
>W1610753237
LNEH01000101
Verrucomicrobiota
Verrucomicrobia bacterium Ga0077533 [LNEH]
4849
4775
-
Thr
TGT
[ENA]
¡û
>W1610923765
LSZP01000003
Verrucomicrobiota
Cephaloticoccus capnophilus [LSZP]
7275
7201
-
Thr
TGT
[ENA]
¡û
>W1610923825
LSZQ01000034
Verrucomicrobiota
Cephaloticoccus primus [LSZQ]
15415
15489
+
Thr
TGT
[ENA]
¡û
>W1611012618
LXWT01000076
Verrucomicrobiota
Opitutaceae bacterium TAV3 [LXWT]
57859
57785
-
Thr
TGT
[ENA]
¡û
>W1611012660
LXWU01000078
Verrucomicrobiota
Opitutaceae bacterium TAV4 [LXWU]
57986
57912
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK