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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374141 (18 seq.)
>W1711229627
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
95525
95451
-
Gln
TTG
[ENA]
¡û
>WENV182561102
OJDV01005233
[OJDV] seawater metagenome; Sea water
2403
2329
-
Gln
TTG
[ENA]
¡û
>WENV170668416
LADL02003669
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
8395
8469
+
Gln
TTG
[ENA]
¡û
>C181062144
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
2963573
2963647
+
Gln
TTG
-
¡û
>C181068253
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
1887437
1887511
+
Gln
TTG
-
¡û
>C181220363
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
3015365
3015439
+
Gln
TTG
-
¡û
>W1910727970
MGVU01000583
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
619
545
-
Gln
TTG
[ENA]
¡û
>W1911532511
OGVD01000003
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
209630
209704
+
Gln
TTG
[ENA]
¡û
>W2010308789
CABWKY010000007
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
91678
91604
-
Gln
TTG
[ENA]
¡û
>W2010861398
MGVU01000583
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
619
545
-
Gln
TTG
[ENA]
¡û
>W2011165270
OGVD01000003
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
209630
209704
+
Gln
TTG
[ENA]
¡û
>W2011231706
PYIA01000141
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
17903
17977
+
Gln
TTG
[ENA]
¡û
>C211295935
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
1385068
1384994
-
Gln
TTG
-
¡û
>C231232419
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
2740699
2740625
-
Gln
TTG
-
¡û
>C161073970
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2836451
2836377
-
Gln
TTG
[Ensembl]
¡û
>W1611013497
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
95525
95451
-
Gln
TTG
[ENA]
¡û
>WENV078177
AAFZ01003297
Fossil microbial community from Whale Fall (Santa Cruz Basin)
356
280
-
Gln
TTG
[ENA]
>W1710593896
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1606020
1606094
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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