This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374142 (107 seq.)
>W1710892398
LNDR01000392
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
21776
21850
+
Gln
TTG
[ENA]
¡û
>W1710892714
LNEA01000262
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
880
954
+
Gln
TTG
[ENA]
¡û
>W1710893734
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>W1711385328
MEEB01000233
Alphaproteobacteria
Hyphomicrobium sp. SCN 65-11 [MEEB]
1629
1555
-
Gln
TTG
[ENA]
¡û
>C171100641
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2381300
2381226
-
Gln
TTG
-
¡û
>C171119421
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2852367
2852293
-
Gln
TTG
-
¡û
>WENV181167326
OEIU01020109
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2290
2216
-
Gln
TTG
[ENA]
¡û
>WENV181190074
OEOF01458336
[OEOF] activated sludge metagenome; Activated Sludge
34
108
+
Gln
TTG
[ENA]
¡û
>WENV181308462
OFIS01026596
[OFIS] sludge metagenome; sludge
38
112
+
Gln
TTG
[ENA]
¡û
>W141224612
BAIO01000169
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
1171
1245
+
Gln
TTG
[ENA]
¡û
>WENV170000019
AERA01001033
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1950
1876
-
Gln
TTG
[ENA]
¡û
>W141402025
JDTI01000193
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
175060
174986
-
Gln
TTG
[ENA]
¡û
>WENV170650964
JRYE01089409
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
74
1
-
Gln
TTG
[ENA]
¡û
>WENV170652249
JRYH01000303
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
10208
10134
-
Gln
TTG
[ENA]
¡û
>WENV170652271
JRYH01000461
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
13341
13267
-
Gln
TTG
[ENA]
¡û
>WENV170652754
JRYH01022563
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1359
1285
-
Gln
TTG
[ENA]
¡û
>WENV170653036
JRYI01001175
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2730
2656
-
Gln
TTG
[ENA]
¡û
>WENV170655105
JTFN01005143
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1569
1495
-
Gln
TTG
[ENA]
¡û
>WENV170709336
LNFM01000267
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
215357
215431
+
Gln
TTG
[ENA]
¡û
>WENV170710033
LNFM01001087
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5148
5222
+
Gln
TTG
[ENA]
¡û
>WENV170711087
LNFM01003494
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15363
15289
-
Gln
TTG
[ENA]
¡û
>WENV170711364
LNFM01004872
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12190
12264
+
Gln
TTG
[ENA]
¡û
>WENV170711411
LNFM01005143
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32134
32208
+
Gln
TTG
[ENA]
¡û
>WENV170713437
LNFM01031245
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1706
1780
+
Gln
TTG
[ENA]
¡û
>WENV170714849
LNFM01106823
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
205
279
+
Gln
TTG
[ENA]
¡û
>C181103429
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
3046198
3046272
+
Gln
TTG
-
¡û
>C191023946
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
819782
819856
+
Gln
TTG
-
¡û
>C191090640
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1025993
1026067
+
Gln
TTG
-
¡û
>C191150973
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2463527
2463453
-
Gln
TTG
-
¡û
>W1910015226
BDLU01000056
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
74485
74411
-
Gln
TTG
[ENA]
¡û
>W1910231987
FPEI01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
228543
228617
+
Gln
TTG
[ENA]
¡û
>W1910232060
FPEJ01000009
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
222046
221972
-
Gln
TTG
[ENA]
¡û
>W1910694720
MDTO01000020
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4006
4080
+
Gln
TTG
[ENA]
¡û
>W1910695669
MDVZ01000295
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
7679
7753
+
Gln
TTG
[ENA]
¡û
>W1910929250
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
38776
38702
-
Gln
TTG
[ENA]
¡û
>W1910972029
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
495198
495124
-
Gln
TTG
[ENA]
¡û
>W1910990435
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
20401
20475
+
Gln
TTG
[ENA]
¡û
>W1910990515
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
438765
438691
-
Gln
TTG
[ENA]
¡û
>W1910990595
NKUA01000020
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
20296
20370
+
Gln
TTG
[ENA]
¡û
>W1910990630
NKUB01000007
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
120014
119940
-
Gln
TTG
[ENA]
¡û
>W1910990687
NKUC01000031
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
20571
20645
+
Gln
TTG
[ENA]
¡û
>W1810894182
QUWV01000070
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
69378
69304
-
Gln
TTG
[ENA]
¡û
>C151006036
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3019006
3019080
+
Gln
TTG
[Ensembl]
¡û
>W2010077858
BDLU01000056
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
74485
74411
-
Gln
TTG
[ENA]
¡û
>W2010077906
BDLW01000028
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
74619
74545
-
Gln
TTG
[ENA]
¡û
>W2010385530
FPEI01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
228543
228617
+
Gln
TTG
[ENA]
¡û
>W2010385603
FPEJ01000009
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
222046
221972
-
Gln
TTG
[ENA]
¡û
>W2010604369
JABJWC010000016
Alphaproteobacteria
Komagataeibacter melomenusus AV436 [JABJWC]
20448
20522
+
Gln
TTG
[ENA]
¡û
>W2010651962
JABXXS010000025
Alphaproteobacteria
Komagataeibacter swingsii LMG 25 [JABXXS]
31518
31444
-
Gln
TTG
[ENA]
¡û
>W2010713598
JACHUU010000022
Alphaproteobacteria
Komagataeibacter europaeus GH1 [JACHUU]
3868
3942
+
Gln
TTG
[ENA]
¡û
>W2010731430
JACIJA010000012
Alphaproteobacteria
Komagataeibacter kakiaceti DSM 24098 [JACIJA]
70253
70179
-
Gln
TTG
[ENA]
¡û
>W2010828313
MDTO01000020
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4006
4080
+
Gln
TTG
[ENA]
¡û
>W2010829262
MDVZ01000295
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
7679
7753
+
Gln
TTG
[ENA]
¡û
>W2010979493
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
38776
38702
-
Gln
TTG
[ENA]
¡û
>W2010990865
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
495198
495124
-
Gln
TTG
[ENA]
¡û
>W2010995462
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
20401
20475
+
Gln
TTG
[ENA]
¡û
>W2010995524
NKTY01000023
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
30875
30801
-
Gln
TTG
[ENA]
¡û
>W2010995542
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
438765
438691
-
Gln
TTG
[ENA]
¡û
>W2010995622
NKUA01000020
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
20296
20370
+
Gln
TTG
[ENA]
¡û
>W2010995657
NKUB01000007
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
120014
119940
-
Gln
TTG
[ENA]
¡û
>W2010995714
NKUC01000031
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
20571
20645
+
Gln
TTG
[ENA]
¡û
>W2011284901
QQBI01000024
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
20355
20429
+
Gln
TTG
[ENA]
¡û
>W2011338847
QYAZ01000001
Alphaproteobacteria
Komagataeibacter medellinensis ID13488 [QYAZ]
1822083
1822009
-
Gln
TTG
[ENA]
¡û
>W2110180885
JABLUU010000015
Alphaproteobacteria
Komagataeibacter oboediens IMBG 311 [JABLUU]
84421
84347
-
Gln
TTG
[ENA]
¡û
>W2110180925
JABLUV010000012
Alphaproteobacteria
Komagataeibacter oboediens IMBG 314 [JABLUV]
84421
84347
-
Gln
TTG
[ENA]
¡û
>W2110638175
JAHQRM010000016
Alphaproteobacteria
Komagataeibacter oboediens SI3053 [JAHQRM]
69227
69153
-
Gln
TTG
[ENA]
¡û
>W2110640041
JAHRDS010000014
Alphaproteobacteria
Komagataeibacter melomenusus SI3083 [JAHRDS]
48667
48593
-
Gln
TTG
[ENA]
¡û
>W2110640144
JAHRDU010000018
Alphaproteobacteria
Komagataeibacter oboediens AV371 [JAHRDU]
76881
76807
-
Gln
TTG
[ENA]
¡û
>W2110680639
JAIHLR010000011
Alphaproteobacteria
Komagataeibacter rhaeticus K15 [JAIHLR]
5468
5394
-
Gln
TTG
[ENA]
¡û
>C211146479
CP061369
Alphaproteobacteria
Komagataeibacter rhaeticus ENS9b [CP061369]
372596
372522
-
Gln
TTG
-
¡û
>C231037836
CP028908
Alphaproteobacteria
Bradyrhizobium sp. WD16 [CP028908]
100700
100626
-
Gln
TTG
-
¡û
>C231602532
CP117861
Alphaproteobacteria
Komagataeibacter oboediens NCIB 8034 [CP117861]
1034530
1034456
-
Gln
TTG
-
¡û
>C231615074
CP118675
Alphaproteobacteria
Komagataeibacter nataicola DS12 [CP118675]
2681761
2681835
+
Gln
TTG
-
¡û
>W2110778570
VWPI01000138
Alphaproteobacteria
Komagataeibacter sp. FXV3 [VWPI]
18392
18318
-
Gln
TTG
[ENA]
¡û
>C241056793
CP041348
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 17276 [CP041348]
822694
822768
+
Gln
TTG
-
¡û
>C241080519
CP043481
Alphaproteobacteria
Komagataeibacter oboediens BPZTR01 [CP043481]
2092110
2092036
-
Gln
TTG
-
¡û
>C241141847
CP050139
Alphaproteobacteria
Komagataeibacter rhaeticus ENS 9a1a [CP050139]
374075
374001
-
Gln
TTG
-
¡û
>W2130000371
BDLT01000045
Alphaproteobacteria
Komagataeibacter oboediens MSKU3 [BDLT]
56161
56087
-
Gln
TTG
[ENA]
¡û
>C241346502
CP139093
Alphaproteobacteria
Komagataeibacter rhaeticus CGMCC 2955 [CP139093]
2078675
2078749
+
Gln
TTG
-
¡û
>W2310008772
BAQH01000093
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [BAQH]
20334
20408
+
Gln
TTG
[ENA]
¡û
>W2310008942
BAQM01000040
Alphaproteobacteria
Komagataeibacter nataicola NRIC 0616 [BAQM]
20441
20515
+
Gln
TTG
[ENA]
¡û
>W2310008973
BAQN01000017
Alphaproteobacteria
Komagataeibacter oboediens DSM 11826 [BAQN]
8987
8913
-
Gln
TTG
[ENA]
¡û
>W2310009013
BAQO01000111
Alphaproteobacteria
Komagataeibacter rhaeticus DSM 16663 [BAQO]
137570
137496
-
Gln
TTG
[ENA]
¡û
>W2310009079
BAQQ01000034
Alphaproteobacteria
Komagataeibacter saccharivorans NRIC 0614 [BAQQ]
30828
30754
-
Gln
TTG
[ENA]
¡û
>W2310009135
BAQR01000071
Alphaproteobacteria
Komagataeibacter sucrofermentans DSM 15973 [BAQR]
20251
20325
+
Gln
TTG
[ENA]
¡û
>W2310009181
BAQS01000112
Alphaproteobacteria
Komagataeibacter swingsii DSM 16373 [BAQS]
10474
10400
-
Gln
TTG
[ENA]
¡û
>W2310009196
BAQT01000040
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BAQT]
20431
20505
+
Gln
TTG
[ENA]
¡û
>WENV11100377
AERA01001033
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1950
1876
-
Gln
TTG
[ENA]
¡û
>C11109988
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2431545
2431471
-
Gln
TTG
[Ensembl]
¡û
>W1511431887
JUFX01000245
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
22620
22694
+
Gln
TTG
[ENA]
¡û
>W11157675
AFCH01000045
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
17519
17445
-
Gln
TTG
[ENA]
¡û
>W11186785
CADP01000031
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
21847
21921
+
Gln
TTG
[ENA]
¡û
>W11186831
CADR01000013
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
25932
26006
+
Gln
TTG
[ENA]
¡û
>W11186893
CADS01000016
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
21827
21901
+
Gln
TTG
[ENA]
¡û
>W11186964
CADT01000014
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
54714
54640
-
Gln
TTG
[ENA]
¡û
>W1610041130
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1610041261
BANI01000047
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
30556
30482
-
Gln
TTG
[ENA]
¡û
>W1610041290
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
>W1610070897
BCTP01000034
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
9862
9788
-
Gln
TTG
[ENA]
¡û
>W1610752664
LNDR01000392
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
21776
21850
+
Gln
TTG
[ENA]
¡û
>W1610752980
LNEA01000262
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
880
954
+
Gln
TTG
[ENA]
¡û
>W1610754000
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>WENV078191
AAFZ01005319
Fossil microbial community from Whale Fall (Santa Cruz Basin)
245
321
+
Gln
TTG
[ENA]
>W1710038328
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1710038459
BANI01000047
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
30556
30482
-
Gln
TTG
[ENA]
¡û
>W1710038488
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
>W1710068219
BCTP01000034
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
9862
9788
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK