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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374148 (29 seq.)
>W1710869705
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
51055
51129
+
Thr
GGT
[ENA]
¡û
>W1711229612
LXYP01000007
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
5229
5155
-
Thr
GGT
[ENA]
¡û
>C171074103
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
662765
662691
-
Thr
GGT
-
¡û
>C009127
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
2738529
2738603
+
Thr
GGT
[Ensembl]
¡û
>w023589
AAXZ01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
110211
110287
+
Thr
GGT
[ENA]
¡û
>WENV182557784
OJDK01012169
[OJDK] seawater metagenome; Sea water
513
439
-
Thr
GGT
[ENA]
¡û
>WENV182585828
OJHI01019436
[OJHI] seawater metagenome; Sea water
427
501
+
Thr
GGT
[ENA]
¡û
>WENV170668388
LADL02003425
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
17170
17096
-
Thr
GGT
[ENA]
¡û
>C181062155
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1807912
1807838
-
Thr
GGT
-
¡û
>C181068283
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
542470
542396
-
Thr
GGT
-
¡û
>W09101641
AAGG01000001
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
313869
313795
-
Thr
GGT
[ENA]
¡û
>C181123343
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
4073873
4073947
+
Thr
GGT
-
¡û
>W2010308790
CABWKY010000008
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
39167
39241
+
Thr
GGT
[ENA]
¡û
>W2010320975
CACSJO010000009
Alphaproteobacteria
Novosphingobium sp. 18050 [CACSJO]
88506
88580
+
Thr
GGT
[ENA]
¡û
>W2010321396
CACSJU010000008
Alphaproteobacteria
Novosphingobium sp. 18052 [CACSJU]
88836
88910
+
Thr
GGT
[ENA]
¡û
>W2011231684
PYIA01000059
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
32484
32410
-
Thr
GGT
[ENA]
¡û
>W2012308947
WEIC01000004
Alphaproteobacteria
Amylibacter sp. SFDW26 [WEIC]
267657
267731
+
Thr
GGT
[ENA]
¡û
>W2012439264
WTYP01000002
Alphaproteobacteria
Altererythrobacter luteolus SW-109 [WTYP]
595272
595346
+
Thr
GGT
[ENA]
¡û
>W2012439707
WTYZ01000001
Alphaproteobacteria
Altererythrobacter aestiaquae KCTC 42006 [WTYZ]
309801
309727
-
Thr
GGT
[ENA]
¡û
>W2110611430
JAHKPK010000060
Alphaproteobacteria
Pacificibacter marinus F2R14 [JAHKPK]
23435
23509
+
Thr
GGT
[ENA]
¡û
>C211132582
CP060388
Alphaproteobacteria
Sphingobium sp. KCTC 72723 [CP060388]
2260902
2260976
+
Thr
GGT
-
¡û
>C211295930
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
1938911
1938837
-
Thr
GGT
-
¡û
>C241149608
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
2840370
2840444
+
Thr
GGT
-
¡û
>C161073943
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
624426
624500
+
Thr
GGT
[Ensembl]
¡û
>W1610732051
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
51055
51129
+
Thr
GGT
[ENA]
¡û
>WENV078061
AAFY01014840
Fossil microbial community from Whale Fall (Santa Cruz Basin)
459
533
+
Thr
GGT
[ENA]
>WENV078236
AAFZ01012683
Fossil microbial community from Whale Fall (Santa Cruz Basin)
625
699
+
Thr
GGT
[ENA]
>WENV078391
AAGA01006083
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
994
1068
+
Thr
GGT
[ENA]
>W1710628565
JPUR01000214
Alphaproteobacteria
Marinosulfonomonas sp. PRT-SC04 [JPUR]
17805
17731
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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