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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37426 (16 seq.)
>W1711783503
MVOD01000010
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
176658
176570
-
Leu
TAA
[ENA]
¡û
>C019003
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3879854
3879766
-
Leu
TAA
[Ensembl]
¡û
>WENV180020013
FTCV01000493
[FTCV] metagenome; soil
742
830
+
Leu
TAA
[ENA]
¢þ
>w001288
AAAF01000011
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
388590
388500
-
Leu
TAA
[ENA]
¡û
>CL170100089
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
4979224
4978888
-
Leu
TAA
[Ensembl]
¡û
>C181041869
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3784484
3784396
-
Leu
TAA
-
¡û
>C181041915
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3812026
3811938
-
Leu
TAA
-
¡û
>C191071743
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
2801945
2801857
-
Leu
TAA
-
¡û
>W09107589
ABJR01000002
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
251607
251519
-
Leu
TAA
[ENA]
¡û
>W1911219144
NRSI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
41852
41940
+
Leu
TAA
[ENA]
¡û
>W1911760577
QWVU01000037
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
2991
3079
+
Leu
TAA
[ENA]
¡û
>W1911809179
QYYC01000039
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
177048
176960
-
Leu
TAA
[ENA]
¡û
>W10112825
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
129787
129699
-
Leu
TAA
[ENA]
¡û
>C10110764
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
4214608
4214520
-
Leu
TAA
[Ensembl]
¡û
>W11116052
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
129787
129699
-
Leu
TAA
[ENA]
¡û
>C11118746
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2071110
2071198
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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