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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37433 (23 seq.)
>W1710787508
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
96969
97059
+
Ser
TGA
[ENA]
¡û
>W131177910
ARLD01000083
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
40480
40390
-
Ser
TGA
[ENA]
¡û
>W131231952
AUIW01000004
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
195225
195315
+
Ser
TGA
[ENA]
¡û
>WENV180014152
FPIC01069798
[FPIC] soil metagenome; Soil
2
92
+
Ser
TGA
[ENA]
¡û
>W141080499
ATNI01000025
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
41976
41886
-
Ser
TGA
[ENA]
¡û
>WENV181285651
OFGS01007752
[OFGS] hot springs metagenome; Water and soil
140
50
-
Ser
TGA
[ENA]
¡û
>W141818265
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1623766
1623676
-
Ser
TGA
[ENA]
¡û
>W1911578820
PELL01000392
Deinococcota
Thermus scotoductus 39_S39 [PELL]
2026
1936
-
Ser
TGA
[ENA]
¡û
>W1911578830
PELM01000029
Deinococcota
Thermus scotoductus 38_S38 [PELM]
4878
4968
+
Ser
TGA
[ENA]
¡û
>W1911579403
PELY01000017
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1266
1176
-
Ser
TGA
[ENA]
¡û
>W1911579829
PEMH01000016
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
2014
1924
-
Ser
TGA
[ENA]
¡û
>W1810268464
PRDA01000076
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
1887
1977
+
Ser
TGA
[ENA]
¡û
>W2011189152
PELL01000392
Deinococcota
Thermus scotoductus 39_S39 [PELL]
2026
1936
-
Ser
TGA
[ENA]
¡û
>W2011189162
PELM01000029
Deinococcota
Thermus scotoductus 38_S38 [PELM]
4878
4968
+
Ser
TGA
[ENA]
¡û
>W2011189735
PELY01000017
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1266
1176
-
Ser
TGA
[ENA]
¡û
>W2011190161
PEMH01000016
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
2014
1924
-
Ser
TGA
[ENA]
¡û
>W2110661723
JAHXRS010000022
Deinococcota
Thermus sp. SYSU G05001 [JAHXRS]
42574
42484
-
Ser
TGA
[ENA]
¡û
>C211344213
CP076325
Deinococcota
Thermus antranikianii [CP076325]
637820
637730
-
Ser
TGA
-
¡û
>C231054586
CP046617
Deinococcota
Thermus antranikianii JCM 19900 [CP046617]
165148
165238
+
Ser
TGA
-
¡û
>C231316855
CP092445
Deinococcota
Thermus sp. NEB1569 [CP092445]
123775
123865
+
Ser
TGA
-
¡û
>C231456411
CP102606
Deinococcota
Thermus sp. PS18 [CP102606]
336768
336678
-
Ser
TGA
-
¡û
>C11123063
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
2234942
2234852
-
Ser
TGA
[Ensembl]
¡û
>W1610651363
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
96969
97059
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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