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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374437 (127 seq.)
>W1711044182
LRMV01000101
Actinomycetota
Micromonospora rifamycinica [LRMV]
22158
22230
+
Gln
CTG
[ENA]
¡û
>W131165308
ARBL01000007
Actinomycetota
Catelliglobosispora koreensis DSM 44566 [ARBL]
289953
290025
+
Gln
CTG
[ENA]
¡û
>W131168037
ARDT01000009
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
42695
42767
+
Gln
CTG
[ENA]
¡û
>W131170108
ARFH01000011
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
42463
42535
+
Gln
CTG
[ENA]
¡û
>W131221986
AUAX01000009
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
205063
205135
+
Gln
CTG
[ENA]
¡û
>W1711328821
MBLM01000025
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
41924
41996
+
Gln
CTG
[ENA]
¡û
>W1711328953
MBLO01000210
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
185358
185284
-
Gln
CTG
[ENA]
¡û
>W1711603590
MOME01000012
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
9896
9824
-
Gln
CTG
[ENA]
¡û
>W1711903169
MZMV01000045
Actinomycetota
Micromonospora wenchangensis [MZMV]
57565
57493
-
Gln
CTG
[ENA]
¡û
>WENV180030337
FTJM01000308
[FTJM] metagenome; soil
777
705
-
Gln
CTG
[ENA]
¡û
>WENV180034979
FTKS01280720
[FTKS] metagenome; soil
56
128
+
Gln
CTG
[ENA]
¡û
>WENV180255395
OBEQ010721388
[OBEQ] groundwater metagenome; groundwater
39791
39865
+
Gln
CTG
[ENA]
¡û
>WENV180304615
OBJI01181008
[OBJI] soil metagenome; soil
90
162
+
Gln
CTG
[ENA]
¡û
>WENV180304733
OBJI01333418
[OBJI] soil metagenome; soil
180
108
-
Gln
CTG
[ENA]
¡û
>WENV180309171
OBJR01640971
[OBJR] soil metagenome; soil
134
206
+
Gln
CTG
[ENA]
¡û
>WENV180591647
OCOV01066361
[OCOV] marine metagenome; ENVO:01000301
401
329
-
Gln
CTG
[ENA]
¡û
>WENV180592210
OCOV01225395
[OCOV] marine metagenome; ENVO:01000301
110
38
-
Gln
CTG
[ENA]
¡û
>WENV180689909
OCZB010229278
[OCZB] metagenome; Oyster Gut Contents
237
165
-
Gln
CTG
[ENA]
¡û
>WENV181307884
OFIS01000013
[OFIS] sludge metagenome; sludge
251368
251296
-
Gln
CTG
[ENA]
¡û
>WENV181311286
OFJB01000573
[OFJB] sludge metagenome; sludge
14536
14464
-
Gln
CTG
[ENA]
¡û
>WENV181371512
OFQV01010815
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
836
908
+
Gln
CTG
[ENA]
¡û
>WENV181401823
OFTX01008723
[OFTX] sludge metagenome; sludge
146
218
+
Gln
CTG
[ENA]
¡û
>WENV183666095
ORJL010519829
[ORJL] groundwater metagenome; groundwater
300
228
-
Gln
CTG
[ENA]
¡û
>WENV183750367
PPFU01293716
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1449
1521
+
Gln
CTG
[ENA]
¡û
>W141757542
JNXY01000027
Actinomycetota
Catenuloplanes japonicus [JNXY]
144051
143979
-
Gln
CTG
[ENA]
¡û
>W141758056
JNYJ01000005
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
23436
23364
-
Gln
CTG
[ENA]
¡û
>W141760202
JNZX01000048
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
2355
2427
+
Gln
CTG
[ENA]
¡û
>W1910549515
FZPH01000021
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
71305
71233
-
Gln
CTG
[ENA]
¡û
>W1911681219
QJUG01000186
Actinomycetota
Micromonosporaceae bacterium CPCC 204380 [QJUG]
9316
9244
-
Gln
CTG
[ENA]
¡û
>W1810197157
PNOZ01000052
Actinomycetota
Verrucosispora sp. ts21 [PNOZ]
43835
43907
+
Gln
CTG
[ENA]
¡û
>W1810223975
POTY01000366
Actinomycetota
Micromonospora craterilacus NA12 [POTY]
3651
3723
+
Gln
CTG
[ENA]
¡û
>W1810884451
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
3979503
3979575
+
Gln
CTG
[ENA]
¡û
>W1810906104
QVFU01000093
Actinomycetota
Micromonospora craniellae LHW63014 [QVFU]
6557
6629
+
Gln
CTG
[ENA]
¡û
>W2010140841
BLPG01000001
Actinomycetota
Phytohabitans rumicis NBRC 108638 [BLPG]
2990896
2990824
-
Gln
CTG
[ENA]
¡û
>W2010146027
CAAAFO010000142
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAFO]
109177
109105
-
Gln
CTG
[ENA]
¡û
>W2010146121
CAAAFQ010000087
Actinomycetota
Frankia symbiont of Coriaria arborea [CAAAFQ]
154791
154719
-
Gln
CTG
[ENA]
¡û
>W2010146407
CAAAGY010000265
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAGY]
2274
2202
-
Gln
CTG
[ENA]
¡û
>W2010146462
CAAAGZ010000232
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAGZ]
2536
2464
-
Gln
CTG
[ENA]
¡û
>W2010146512
CAAAHA010000951
Actinomycetota
Frankia symbiont of Coriaria nepalensis [CAAAHA]
250
178
-
Gln
CTG
[ENA]
¡û
>W2010431276
FZPH01000021
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
71305
71233
-
Gln
CTG
[ENA]
¡û
>W2010435903
JAAALO010000003
Actinomycetota
Micromonospora sp. NEAU-HG-1 [JAAALO]
683643
683715
+
Gln
CTG
[ENA]
¡û
>W2010532830
JAAOTI010000033
Actinomycetota
2-25(1) [JAAOTI]
16952
17024
+
Gln
CTG
[ENA]
¡û
>W2010532896
JAAOTJ010000040
Actinomycetota
Catellatospora methionotrophica IMSNU 22006 [JAAOTJ]
9669
9741
+
Gln
CTG
[ENA]
¡û
>W2010570179
JAATVW010000003
Actinomycetota
Planosporangium flavigriseum TBRC 198 [JAATVW]
309894
309822
-
Gln
CTG
[ENA]
¡û
>W2010705956
JACHJW010000001
Actinomycetota
Micromonospora polyrhachis DSM 45886 [JACHJW]
1595110
1595036
-
Gln
CTG
[ENA]
¡û
>W2010709927
JACHMN010000003
Actinomycetota
Allocatelliglobosispora scoriae DSM 45362 [JACHMN]
208403
208475
+
Gln
CTG
[ENA]
¡û
>W2011261379
QJUG01000186
Actinomycetota
Micromonosporaceae bacterium CPCC 204380 [QJUG]
9316
9244
-
Gln
CTG
[ENA]
¡û
>W2011354430
RAPR01000001
Actinomycetota
Catellatospora citrea DSM 44097 [RAPR]
5316788
5316860
+
Gln
CTG
[ENA]
¡û
>W2011374853
RBKT01000001
Actinomycetota
Micromonospora pisi DSM 45175 [RBKT]
5864920
5864992
+
Gln
CTG
[ENA]
¡û
>W2011600728
SISL01000700
Actinomycetota
Verrucosispora sp. SN26_14.1 [SISL]
1200
1272
+
Gln
CTG
[ENA]
¡û
>W2012040385
VIQO01000022
Actinomycetota
Catellatospora sp. H14505 [VIQO]
85627
85699
+
Gln
CTG
[ENA]
¡û
>W2012227484
WARX01000001
Actinomycetota
Catellatospora vulcania NEAU-JM1 [WARX]
274310
274382
+
Gln
CTG
[ENA]
¡û
>W2012236626
WBZD01000016
Actinomycetota
Catellatospora paridis NEAU-CL2 [WBZD]
78098
78026
-
Gln
CTG
[ENA]
¡û
>W2110011608
BBZF01000014
Actinomycetota
Micromonospora sp. TP-A0468 [BBZF]
91438
91366
-
Gln
CTG
[ENA]
¡û
>W2110035037
BMPI01000008
Actinomycetota
Dactylosporangium sucinum JCM 19831 [BMPI]
166752
166680
-
Gln
CTG
[ENA]
¡û
>W2110055507
BNEM01000002
Actinomycetota
Catellatospora sp. TT07R-123 [BNEM]
3574146
3574074
-
Gln
CTG
[ENA]
¡û
>W2110059083
BOMJ01000027
Actinomycetota
Actinoplanes derwentensis NBRC 14935 [BOMJ]
125612
125684
+
Gln
CTG
[ENA]
¡û
>W2110060103
BONB01000041
Actinomycetota
Asanoa ferruginea NBRC 14496 [BONB]
20215
20143
-
Gln
CTG
[ENA]
¡û
>W2110060177
BONC01000045
Actinomycetota
Asanoa iriomotensis NBRC 100142 [BONC]
55154
55082
-
Gln
CTG
[ENA]
¡û
>W2110060260
BONE01000145
Actinomycetota
Asanoa siamensis NBRC 107932 [BONE]
1306
1234
-
Gln
CTG
[ENA]
¡û
>W2110060307
BONF01000031
Actinomycetota
Catellatospora bangladeshensis NBRC 107357 [BONF]
80032
80104
+
Gln
CTG
[ENA]
¡û
>W2110060348
BONG01000047
Actinomycetota
Catellatospora chokoriensis NBRC 107358 [BONG]
5789
5861
+
Gln
CTG
[ENA]
¡û
>W2110060416
BONH01000059
Actinomycetota
Catellatospora citrea NBRC 14495 [BONH]
16810
16882
+
Gln
CTG
[ENA]
¡û
>W2110060464
BONI01000123
Actinomycetota
Catellatospora coxensis NBRC 107359 [BONI]
233
161
-
Gln
CTG
[ENA]
¡û
>W2110060519
BONJ01000036
Actinomycetota
Catellatospora methionotrophica NBRC 14553 [BONJ]
9546
9618
+
Gln
CTG
[ENA]
¡û
>W2110060809
BONQ01000036
Actinomycetota
Dactylosporangium siamense NBRC 106093 [BONQ]
91038
91110
+
Gln
CTG
[ENA]
¡û
>W2110061040
BONU01000006
Actinomycetota
Planosporangium flavigriseum NBRC 105377 [BONU]
214189
214117
-
Gln
CTG
[ENA]
¡û
>W2110061270
BONY01000013
Actinomycetota
Rhizocola hellebori NBRC 109834 [BONY]
47564
47492
-
Gln
CTG
[ENA]
¡û
>W2110061332
BONZ01000015
Actinomycetota
Rugosimonospora africana NBRC 104875 [BONZ]
122705
122778
+
Gln
CTG
[ENA]
¡û
>W2110062646
BOOW01000018
Actinomycetota
Sinosporangium siamense NBRC 109515 [BOOW]
187800
187874
+
Gln
CTG
[ENA]
¡û
>W2110062843
BOPA01000017
Actinomycetota
Micromonospora gifhornensis NBRC 16317 [BOPA]
126289
126361
+
Gln
CTG
[ENA]
¡û
>W2110063056
BOPF01000008
Actinomycetota
Virgisporangium aliadipatigenens NBRC 105644 [BOPF]
88913
88987
+
Gln
CTG
[ENA]
¡û
>W2110063114
BOPG01000004
Actinomycetota
Virgisporangium aurantiacum NBRC 16421 [BOPG]
117281
117209
-
Gln
CTG
[ENA]
¡û
>W2110063189
BOPH01000060
Actinomycetota
Virgisporangium ochraceum NBRC 16418 [BOPH]
4474
4546
+
Gln
CTG
[ENA]
¡û
>W2110063242
BOPI01000014
Actinomycetota
Micromonospora phaseoli NBRC 110907 [BOPI]
5381
5309
-
Gln
CTG
[ENA]
¡û
>W2110215799
JACGMO010000037
Actinomycetota
Micromonospora sp. S-DT3-3-22 [JACGMO]
54548
54476
-
Gln
CTG
[ENA]
¡û
>W2110300804
JADBEB010000001
Actinomycetota
Plantactinospora soyae DSM 46832 [JADBEB]
3801749
3801823
+
Gln
CTG
[ENA]
¡û
>W2110371484
JADPUN010000331
Actinomycetota
Plantactinospora sp. S1510 [JADPUN]
24914
24988
+
Gln
CTG
[ENA]
¡û
>W2110491909
JAFEUC010000002
Actinomycetota
Micromonospora sp. MMS20-R1-14 [JAFEUC]
182526
182598
+
Gln
CTG
[ENA]
¡û
>W2110492309
JAFEUO010000001
Actinomycetota
Micromonospora sp. MMS20-R2-29 [JAFEUO]
641389
641461
+
Gln
CTG
[ENA]
¡û
>W2110535945
JAGFWR010000005
Actinomycetota
Micromonospora sp. MMS20-R2-23 [JAGFWR]
122309
122237
-
Gln
CTG
[ENA]
¡û
>W2110559551
JAGKQP010000002
Actinomycetota
Micromonospora sp. RL09-050-HVF-A [JAGKQP]
6072571
6072643
+
Gln
CTG
[ENA]
¡û
>W2110639967
JAHRCY010000001
Actinomycetota
Catellatospora sp. NEAU-YM18 [JAHRCY]
216371
216299
-
Gln
CTG
[ENA]
¡û
>C211011612
AP023359
Actinomycetota
Polymorphospora rubra NBRC 101157 [AP023359]
4239462
4239534
+
Gln
CTG
-
¡û
>C211011665
AP023360
Actinomycetota
Catellatospora sp. IY07-71 [AP023360]
2566947
2567019
+
Gln
CTG
-
¡û
>C211152389
CP061725
Actinomycetota
Micromonospora craniellae LHW63014 [CP061725]
1159104
1159032
-
Gln
CTG
-
¡û
>W10111564
ADDL01000105
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
9093
9167
+
Gln
CTG
[ENA]
¡û
>C231131864
CP073720
Actinomycetota
Dactylosporangium fulvum NRRL B-16292 [CP073720]
1613920
1613992
+
Gln
CTG
-
¡û
>C231131926
CP073721
Actinomycetota
Dactylosporangium roseum NRRL B-16295 [CP073721]
1526526
1526598
+
Gln
CTG
-
¡û
>C231132464
CP073767
Actinomycetota
Dactylosporangium aurantiacum NRRL B-8018 [CP073767]
1680107
1680035
-
Gln
CTG
-
¡û
>C231382795
CP097332
Actinomycetota
Jatrophihabitans telluris N237 [CP097332]
1723184
1723256
+
Gln
CTG
-
¡û
>C231385376
CP097463
Actinomycetota
Jatrophihabitans sp. SB3-54 [CP097463]
759548
759476
-
Gln
CTG
-
¡û
>C241007261
AP022870
Actinomycetota
Phytohabitans flavus NBRC 107702 [AP022870]
9054600
9054672
+
Gln
CTG
-
¡û
>C241055317
CP041061
Actinomycetota
Micromonospora sp. HM134 [CP041061]
1505419
1505491
+
Gln
CTG
-
¡û
>W2130003237
BOND01000021
Actinomycetota
Asanoa ishikariensis NBRC 14551 [BOND]
265245
265173
-
Gln
CTG
[ENA]
¡û
>W2130024568
JADWYT010000486
Actinomycetota
Frankia sp. AgW1.1 [JADWYT]
1072
1144
+
Gln
CTG
[ENA]
¡û
>C241170072
CP054923
Actinomycetota
Verrucosispora sp. NA02020 [CP054923]
1745700
1745772
+
Gln
CTG
-
¡û
>C241203577
CP107929
Actinomycetota
Micromonospora sp. NBC_00421 [CP107929]
4278888
4278816
-
Gln
CTG
-
¡û
>C241214119
CP109151
Actinomycetota
Micromonospora sp. NBC_01739 [CP109151]
3540563
3540491
-
Gln
CTG
-
¡û
>C241215015
CP109199
Actinomycetota
Micromonospora sp. NBC_01699 [CP109199]
1416252
1416324
+
Gln
CTG
-
¡û
>C241216953
CP109472
Actinomycetota
Micromonospora rifamycinica NBC_01461 [CP109472]
4205212
4205284
+
Gln
CTG
-
¡û
>W2130034298
JAGSXH010000144
Actinomycetota
Actinocrinis puniceicyclus DSM 45618 [JAGSXH]
2388
2460
+
Gln
CTG
[ENA]
¡û
>C241293775
CP130426
Actinomycetota
Micromonospora sp. HUAS LYJ1 [CP130426]
6327465
6327537
+
Gln
CTG
-
¡û
>C241346739
CP139171
Actinomycetota
Dactylosporangium sp. AC04546 [CP139171]
1620706
1620634
-
Gln
CTG
-
¡û
>W2310010015
BLRH01000014
Actinomycetota
Rhizohabitans arisaemae K14-0274 [BLRH]
180851
180923
+
Gln
CTG
[ENA]
¡û
>W2310010789
BNEH01000005
Actinomycetota
Micromonospora sp. AKA109 [BNEH]
4431130
4431058
-
Gln
CTG
[ENA]
¡û
>C11109196
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
1299062
1299136
+
Gln
CTG
[Ensembl]
¡û
>W11114491
ADDL01000105
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
9093
9167
+
Gln
CTG
[ENA]
¡û
>W1610052406
BBHW01000449
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
1446
1518
+
Gln
CTG
[ENA]
¡û
>W1610052455
BBHX01000316
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
622
550
-
Gln
CTG
[ENA]
¡û
>W1610052498
BBHY01000209
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
641
567
-
Gln
CTG
[ENA]
¡û
>W1610052538
BBHZ01000222
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
461
387
-
Gln
CTG
[ENA]
¡û
>W1610052609
BBIB01000245
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
612
538
-
Gln
CTG
[ENA]
¡û
>W1610052658
BBIC01000211
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
520
446
-
Gln
CTG
[ENA]
¡û
>W121010779
AGJN01000060
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
38220
38292
+
Gln
CTG
[ENA]
¡û
>W1610507953
FLUV01002265
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
2304
2232
-
Gln
CTG
[ENA]
¡û
>W1610885427
LRMV01000101
Actinomycetota
Micromonospora rifamycinica [LRMV]
22158
22230
+
Gln
CTG
[ENA]
¡û
>W1710048784
BBHW01000449
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
1446
1518
+
Gln
CTG
[ENA]
¡û
>W1710048833
BBHX01000316
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
622
550
-
Gln
CTG
[ENA]
¡û
>W1710048876
BBHY01000209
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
641
567
-
Gln
CTG
[ENA]
¡û
>W1710048916
BBHZ01000222
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
461
387
-
Gln
CTG
[ENA]
¡û
>W1710048987
BBIB01000245
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
612
538
-
Gln
CTG
[ENA]
¡û
>W1710049036
BBIC01000211
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
520
446
-
Gln
CTG
[ENA]
¡û
>W1710502920
FMCU01000006
Actinomycetota
Micromonospora matsumotoense [FMCU]
161698
161770
+
Gln
CTG
[ENA]
¡û
>W1710516361
FNCN01000013
Actinomycetota
Sinosporangium album [FNCN]
45797
45871
+
Gln
CTG
[ENA]
¡û
>W1710532161
FNQB01000002
Actinomycetota
Asanoa ishikariensis [FNQB]
1008902
1008976
+
Gln
CTG
[ENA]
¡û
>W1710542004
FNYV01000001
Actinomycetota
Micromonospora phaseoli [FNYV]
139215
139287
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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