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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374567 (86 seq.)
>W1711386972
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
198754
198680
-
Glu
TTC
[ENA]
¡û
>W1711386973
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
198650
198576
-
Glu
TTC
[ENA]
¡û
>W131215035
ATUR01000002
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
336069
335995
-
Glu
CTC
[ENA]
¡û
>W1711505630
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554258
554184
-
Glu
TTC
[ENA]
¡û
>W1711505631
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554155
554081
-
Glu
TTC
[ENA]
¡û
>W1711505632
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554051
553977
-
Glu
TTC
[ENA]
¡û
>W1712105770
NISJ01000003
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
283646
283572
-
Glu
CTC
[ENA]
¡û
>C171049887
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2527331
2527257
-
Glu
CTC
-
¡û
>WENV180101306
OAOU01022521
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
241
167
-
Glu
CTC
[ENA]
¡û
>WENV183731373
PJTS01045396
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
42
116
+
Glu
CTC
[ENA]
¡û
>W141426753
JEMV01000057
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
23770
23696
-
Glu
CTC
[ENA]
¡û
>WENV170993893
MWWC01030497
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
243
317
+
Glu
CTC
[ENA]
¡û
>W141484935
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
180653
180579
-
Glu
CTC
[ENA]
¡û
>C181192068
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1633650
1633576
-
Glu
CTC
-
¡û
>C191095134
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
2512900
2512826
-
Glu
CTC
-
¡û
>W141808041
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
3055660
3055586
-
Glu
CTC
[ENA]
¡û
>W1910199131
FBVT01000013
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
8329
8255
-
Glu
CTC
[ENA]
¡û
>W1910199173
FBVU01000012
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
8219
8145
-
Glu
CTC
[ENA]
¡û
>W1910199216
FBVV01000004
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
113417
113491
+
Glu
CTC
[ENA]
¡û
>W1910199331
FBVX01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
113146
113220
+
Glu
CTC
[ENA]
¡û
>W1910199996
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
848384
848310
-
Glu
CTC
[ENA]
¡û
>W1911075015
NMUA01000020
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
15219
15145
-
Glu
CTC
[ENA]
¡û
>W1810676640
QKMD01000012
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
20279
20353
+
Glu
CTC
[ENA]
¡û
>W2010308613
CABWKV010000034
Alphaproteobacteria
Novosphingobium sp. 9U [CABWKV]
503666
503740
+
Glu
CTC
[ENA]
¡û
>W2010320949
CACSJO010000001
Alphaproteobacteria
Novosphingobium sp. 18050 [CACSJO]
254702
254776
+
Glu
CTC
[ENA]
¡û
>W2010321416
CACSJU010000026
Alphaproteobacteria
Novosphingobium sp. 18052 [CACSJU]
20989
21063
+
Glu
CTC
[ENA]
¡û
>W2010370235
CAHJWP010000103
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWP]
1228
1302
+
Glu
CTC
[ENA]
¡û
>W2010370362
CAHJWT010000105
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWT]
4502
4576
+
Glu
CTC
[ENA]
¡û
>W2010370591
CAHJXC010000232
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJXC]
3750
3824
+
Glu
CTC
[ENA]
¡û
>W2010373346
FBVT01000013
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
8329
8255
-
Glu
CTC
[ENA]
¡û
>W2010373388
FBVU01000012
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
8219
8145
-
Glu
CTC
[ENA]
¡û
>W2010373431
FBVV01000004
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
113417
113491
+
Glu
CTC
[ENA]
¡û
>W2010373483
FBVW01000001
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
8217
8143
-
Glu
CTC
[ENA]
¡û
>W2010373546
FBVX01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
113146
113220
+
Glu
CTC
[ENA]
¡û
>W2010374211
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
848384
848310
-
Glu
CTC
[ENA]
¡û
>W2010567682
JAATJI010000001
Alphaproteobacteria
Polymorphobacter fuscus DSM 105347 [JAATJI]
740244
740318
+
Glu
CTC
[ENA]
¡û
>W2010581596
JAAZQL010000009
Alphaproteobacteria
Novosphingobium sp. SG707 [JAAZQL]
143184
143110
-
Glu
TTC
[ENA]
¡û
>W2010581597
JAAZQL010000009
Alphaproteobacteria
Novosphingobium sp. SG707 [JAAZQL]
143081
143007
-
Glu
TTC
[ENA]
¡û
>W2010581598
JAAZQL010000009
Alphaproteobacteria
Novosphingobium sp. SG707 [JAAZQL]
142978
142904
-
Glu
TTC
[ENA]
¡û
>W2010602452
JABGCB010000001
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
32739
32813
+
Glu
TTC
[ENA]
¡û
>W2010602453
JABGCB010000001
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
32842
32916
+
Glu
TTC
[ENA]
¡û
>W2010602454
JABGCB010000001
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
32945
33019
+
Glu
TTC
[ENA]
¡û
>W2010708740
JACHLR010000001
Alphaproteobacteria
Novosphingobium chloroacetimidivorans S00245 [JACHLR]
275201
275275
+
Glu
CTC
[ENA]
¡û
>W2010725172
JACIDX010000012
Alphaproteobacteria
Novosphingobium sediminicola DSM 27057 [JACIDX]
143083
143009
-
Glu
TTC
[ENA]
¡û
>W2010725173
JACIDX010000012
Alphaproteobacteria
Novosphingobium sediminicola DSM 27057 [JACIDX]
142980
142906
-
Glu
TTC
[ENA]
¡û
>W2010725174
JACIDX010000012
Alphaproteobacteria
Novosphingobium sediminicola DSM 27057 [JACIDX]
142877
142803
-
Glu
TTC
[ENA]
¡û
>W2010725220
JACIDY010000007
Alphaproteobacteria
Novosphingobium fluoreni DSM 27568 [JACIDY]
207201
207275
+
Glu
CTC
[ENA]
¡û
>W2011004339
NMUA01000020
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
15219
15145
-
Glu
CTC
[ENA]
¡û
>W2011407962
RCZK01000005
Alphaproteobacteria
Sphingomonas oligophenolica S5.1 [RCZK]
142151
142077
-
Glu
CTC
[ENA]
¡û
>W2011522171
SACO01000003
Alphaproteobacteria
Novosphingobium sp. FSY-9 [SACO]
63606
63532
-
Glu
TTC
[ENA]
¡û
>W2011522172
SACO01000003
Alphaproteobacteria
Novosphingobium sp. FSY-9 [SACO]
63471
63397
-
Glu
TTC
[ENA]
¡û
>W2011970555
VCAO01000001
Alphaproteobacteria
Erythrobacter sp. KEM-5 [VCAO]
173831
173757
-
Glu
CTC
[ENA]
¡û
>W2012063548
VJWA01000001
Alphaproteobacteria
Sandarakinorhabdus sp. LB1R16 [VJWA]
1553065
1552991
-
Glu
CTC
[ENA]
¡û
>W2012308119
WEFI01000001
Alphaproteobacteria
Polymorphobacter fuscus D40P [WEFI]
402061
401987
-
Glu
CTC
[ENA]
¡û
>W2012337747
WIOL01000001
Alphaproteobacteria
Polymorphobacter fuscus D40P [WIOL]
402061
401987
-
Glu
CTC
[ENA]
¡û
>W2110190446
JABVZR010000001
Alphaproteobacteria
Novosphingobium sp. GeG2 [JABVZR]
2153773
2153847
+
Glu
TTC
[ENA]
¡û
>W2110195992
JABXWS010000038
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
31665
31739
+
Glu
CTC
[ENA]
¡û
>W2110593197
JAHCRK010000004
Alphaproteobacteria
Sphingosinicellaceae bacterium PAMC 29367 [JAHCRK]
253532
253458
-
Glu
CTC
[ENA]
¡û
>C201261397
CP053346
Alphaproteobacteria
Sphingomonas sp. AP4-R1 [CP053346]
3225284
3225210
-
Glu
CTC
-
¡û
>C211132576
CP060388
Alphaproteobacteria
Sphingobium sp. KCTC 72723 [CP060388]
1545902
1545976
+
Glu
CTC
-
¡û
>C211365768
CP079108
Alphaproteobacteria
Sphingosinicellaceae bacterium PAMC 29368 [CP079108]
2160061
2160135
+
Glu
CTC
-
¡û
>C211374847
CP080243
Alphaproteobacteria
Polymorphobacter sp. PAMC 29334 [CP080243]
2894046
2894120
+
Glu
CTC
-
¡û
>C211388409
CP081848
Alphaproteobacteria
Polymorphobacter sp. PAMC 29362 [CP081848]
3334721
3334795
+
Glu
CTC
-
¡û
>C231032183
CP022707
Alphaproteobacteria
Novosphingobium sp. 9 [CP022707, CP022708]
2435516
2435590
+
Glu
CTC
-
¡û
>C231596024
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
1606281
1606207
-
Glu
TTC
-
¡û
>C231596025
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
1606178
1606104
-
Glu
TTC
-
¡û
>C231596026
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
1606074
1606000
-
Glu
TTC
-
¡û
>C231603155
CP117881
Alphaproteobacteria
Novosphingobium sp. KACC 22771 [CP117881]
2277526
2277600
+
Glu
TTC
-
¡û
>C231603156
CP117881
Alphaproteobacteria
Novosphingobium sp. KACC 22771 [CP117881]
2277629
2277703
+
Glu
TTC
-
¡û
>C231603157
CP117881
Alphaproteobacteria
Novosphingobium sp. KACC 22771 [CP117881]
2277733
2277807
+
Glu
TTC
-
¡û
>C241197763
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
2343327
2343401
+
Glu
TTC
-
¡û
>C241197764
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
2343430
2343504
+
Glu
TTC
-
¡û
>C241197765
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
2343534
2343608
+
Glu
TTC
-
¡û
>C241282374
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1867440
1867514
+
Glu
CTC
-
¡û
>W2310022528
BSFC01000039
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
32765
32839
+
Glu
CTC
[ENA]
¡û
>C11116193
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2575579
2575505
-
Glu
CTC
[Ensembl]
¡û
>W1510757025
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
155879
155805
-
Glu
CTC
[ENA]
¡û
>W1511519407
JXZE01000006
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
83327
83401
+
Glu
CTC
[ENA]
¡û
>W1610071234
BCTX01000029
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
2663
2589
-
Glu
CTC
[ENA]
¡û
>W1610076985
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141975
141901
-
Glu
TTC
[ENA]
¡û
>W121086733
AKKE01000108
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
3751
3825
+
Glu
CTC
[ENA]
¡û
>W121119257
ALVC01000568
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
191
117
-
Glu
CTC
[ENA]
¡û
>W1610590994
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
128883
128957
+
Glu
CTC
[ENA]
¡û
>W1710068599
BCTX01000029
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
2663
2589
-
Glu
CTC
[ENA]
¡û
>W1710074674
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141975
141901
-
Glu
TTC
[ENA]
¡û
>W1710710274
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
128883
128957
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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