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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374583 (78 seq.)
>W1710860177
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
515004
515078
+
Glu
TTC
[ENA]
¡û
>W1710861949
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
63487
63413
-
Glu
TTC
[ENA]
¡û
>W1711504930
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
501414
501340
-
Glu
TTC
[ENA]
¡û
>W131166482
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
801137
801063
-
Glu
TTC
[ENA]
¡û
>W131175672
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1424876
1424950
+
Glu
TTC
[ENA]
¡û
>w015394
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
4612
4536
-
Glu
TTC
[ENA]
¡û
>WENV180016837
FSVW01004111
[FSVW] metagenome; soil
1589
1663
+
Glu
TTC
[ENA]
¡û
>WENV180020345
FTCZ01001846
[FTCZ] metagenome; soil
195
121
-
Glu
TTC
[ENA]
¡û
>WENV181308062
OFIS01000171
[OFIS] sludge metagenome; sludge
17605
17679
+
Glu
TTC
[ENA]
¡û
>WENV181311300
OFJB01000659
[OFJB] sludge metagenome; sludge
3
77
+
Glu
TTC
[ENA]
¡û
>WENV181311779
OFJB01011858
[OFJB] sludge metagenome; sludge
2232
2306
+
Glu
TTC
[ENA]
¡û
>WENV181311922
OFJB01022910
[OFJB] sludge metagenome; sludge
1479
1405
-
Glu
TTC
[ENA]
¡û
>WENV181402171
OFTY01000184
[OFTY] sludge metagenome; sludge
48456
48382
-
Glu
TTC
[ENA]
¡û
>W141151361
AXBA01000001
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
296159
296233
+
Glu
TTC
[ENA]
¡û
>C08011461
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4619849
4619778
-
Glu
TTC
[Ensembl]
¡û
>C08000335
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
2235680
2235609
-
Glu
TTC
[Ensembl]
¡û
>W141278509
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
2666281
2666207
-
Glu
TTC
[ENA]
¡û
>WENV183667066
ORJL010611199
[ORJL] groundwater metagenome; groundwater
3657
3731
+
Glu
TTC
[ENA]
¡û
>WENV170706276
LNAP01001821
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8332
8406
+
Glu
TTC
[ENA]
¡û
>WENV170707360
LNAP01018615
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4098
4024
-
Glu
TTC
[ENA]
¡û
>W141730069
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
4692576
4692650
+
Glu
TTC
[ENA]
¡û
>W141733764
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
295084
295158
+
Glu
TTC
[ENA]
¡û
>W141810204
JPUG01000066
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
21351
21277
-
Glu
TTC
[ENA]
¡û
>W1810273161
PSNV01000004
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
103388
103462
+
Glu
TTC
[ENA]
¡û
>C151079159
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1230922
1230996
+
Glu
TTC
[Ensembl]
¡û
>W2010317619
CACSAS010000001
Alphaproteobacteria
Starkeya sp. HF14-78462 [CACSAS]
1286397
1286323
-
Glu
TTC
[ENA]
¡û
>W2010609882
JABMLM010000340
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
17055
17129
+
Glu
TTC
[ENA]
¡û
>W2010712720
JACHOO010000010
Alphaproteobacteria
Prosthecomicrobium pneumaticum DSM 16268 [JACHOO]
97324
97250
-
Glu
TTC
[ENA]
¡û
>W2010722803
JACICD010000003
Alphaproteobacteria
Angulomicrobium tetraedrale DSM 5895 [JACICD]
429698
429624
-
Glu
TTC
[ENA]
¡û
>W2010724909
JACIDS010000001
Alphaproteobacteria
Kaistia hirudinis DSM 25966 [JACIDS]
469823
469749
-
Glu
TTC
[ENA]
¡û
>W2010731193
JACIIW010000003
Alphaproteobacteria
Xanthobacter tagetidis DSM 11105 [JACIIW]
446537
446463
-
Glu
TTC
[ENA]
¡û
>W2011402540
RCTF01000002
Alphaproteobacteria
Xanthobacter tagetidis ATCC 700314 [RCTF]
215357
215283
-
Glu
TTC
[ENA]
¡û
>W2011495205
RWKV01000008
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
1239350
1239276
-
Glu
TTC
[ENA]
¡û
>W2011496716
RXIO01000003
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
242488
242562
+
Glu
TTC
[ENA]
¡û
>W2011627325
SMAI01000006
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
66665
66591
-
Glu
TTC
[ENA]
¡û
>W2011633868
SMFY01000002
Alphaproteobacteria
Ancylobacter aquaticus DSM 101 [SMFY]
257620
257546
-
Glu
TTC
[ENA]
¡û
>W2011654985
SOBM01000002
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
35596
35522
-
Glu
TTC
[ENA]
¡û
>W2011963359
VAUP01000015
Alphaproteobacteria
Xanthobacter autotrophicus DSM 432 [VAUP]
543014
543088
+
Glu
TTC
[ENA]
¡û
>W2012088637
VMBP01000004
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
368423
368497
+
Glu
TTC
[ENA]
¡û
>W2012107880
VOSJ01000178
Alphaproteobacteria
Microvirga tunisiensis M8 [VOSJ]
2864
2938
+
Glu
TTC
[ENA]
¡û
>W2012107937
VOSK01000180
Alphaproteobacteria
Microvirga tunisiensis Lmie10 [VOSK]
2864
2938
+
Glu
TTC
[ENA]
¡û
>W2012144447
VTTL01000001
Alphaproteobacteria
Xanthobacter sp. 29k [VTTL]
190100
190174
+
Glu
TTC
[ENA]
¡û
>W2110019327
BMCT01000002
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
115739
115665
-
Glu
TTC
[ENA]
¡û
>W2110022729
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
1396996
1396922
-
Glu
TTC
[ENA]
¡û
>W2110283062
JACXAB010000004
Alphaproteobacteria
Microvirga sp. BT688 [JACXAB]
326804
326878
+
Glu
TTC
[ENA]
¡û
>W2110427303
JAELXT010000010
Alphaproteobacteria
Microvirga sp. BT325 [JAELXT]
67593
67667
+
Glu
TTC
[ENA]
¡û
>W2110444944
JAERQE010000053
Alphaproteobacteria
Microvirga soli R491 [JAERQE]
14987
14913
-
Glu
TTC
[ENA]
¡û
>W2110463008
JAFBID010000103
Alphaproteobacteria
Microvirga arabica SV2184P [JAFBID]
5360
5434
+
Glu
TTC
[ENA]
¡û
>W2110522933
JAGEML010000007
Alphaproteobacteria
Microvirga sp. 3-52 [JAGEML]
108840
108766
-
Glu
TTC
[ENA]
¡û
>W2110540695
JAGGML010000001
Alphaproteobacteria
Xanthobacter flavus WS4821 [JAGGML]
4998528
4998454
-
Glu
TTC
[ENA]
¡û
>W2110563289
JAGPUP010000547
Alphaproteobacteria
Microvirga sp. HBU67558 [JAGPUP]
70546
70472
-
Glu
TTC
[ENA]
¡û
>W2110584226
JAHAMK010000007
Alphaproteobacteria
Microvirga sp. 3-52 [JAHAMK]
59689
59763
+
Glu
TTC
[ENA]
¡û
>W2110590299
JAHBGB010000045
Alphaproteobacteria
Ancylobacter oerskovii CCM 7435 [JAHBGB]
20708
20782
+
Glu
TTC
[ENA]
¡û
>W2110590317
JAHBGC010000020
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
925709
925783
+
Glu
TTC
[ENA]
¡û
>W2110590354
JAHBGD010000005
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
21525
21599
+
Glu
TTC
[ENA]
¡û
>W2110590395
JAHBGE010000001
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
51557
51483
-
Glu
TTC
[ENA]
¡û
>W2110590444
JAHBGF010000010
Alphaproteobacteria
Ancylobacter sonchi VKM B-3145 [JAHBGF]
20684
20758
+
Glu
TTC
[ENA]
¡û
>W2110591590
JAHBRX010000001
Alphaproteobacteria
Chelatococcus sp. HY11 [JAHBRX]
1507464
1507390
-
Glu
TTC
[ENA]
¡û
>W2110593067
JAHCQH010000014
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
433735
433809
+
Glu
TTC
[ENA]
¡û
>C201154105
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
730301
730227
-
Glu
TTC
-
¡û
>C211017730
AP024269
Alphaproteobacteria
Kaistia sp. 32K [AP024269]
2456161
2456235
+
Glu
TTC
-
¡û
>C211017731
AP024269
Alphaproteobacteria
Kaistia sp. 32K [AP024269]
2456312
2456386
+
Glu
TTC
-
¡û
>C211176137
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
4619693
4619767
+
Glu
TTC
-
¡û
>C211255071
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
3843846
3843920
+
Glu
TTC
-
¡û
>W2110716478
JAJALI010000011
Alphaproteobacteria
Ancylobacter sp. Lp-2 [JAJALI]
21018
21092
+
Glu
TTC
[ENA]
¡û
>W10110066
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
372643
372717
+
Glu
TTC
[ENA]
¡û
>C231041377
CP032674
Alphaproteobacteria
Xanthobacter sp. YC-JY1 [CP032674]
2633858
2633932
+
Glu
TTC
-
¡û
>C231179888
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
3488645
3488719
+
Glu
TTC
-
¡û
>C231459545
CP102845
Alphaproteobacteria
Microvirga sp. R24 [CP102845]
3026827
3026753
-
Glu
TTC
-
¡û
>C241059289
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
2050097
2050171
+
Glu
TTC
-
¡û
>C241129924
CP048630
Alphaproteobacteria
Ancylobacter pratisalsi DSM 102029 [CP048630]
4515678
4515752
+
Glu
TTC
-
¡û
>C241132012
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
533183
533109
-
Glu
TTC
-
¡û
>W2310021129
BSDO01000002
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
578558
578632
+
Glu
TTC
[ENA]
¡û
>W2310022814
BSFJ01000005
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [BSFJ]
925709
925783
+
Glu
TTC
[ENA]
¡û
>W2310022977
BSFM01000017
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
21525
21599
+
Glu
TTC
[ENA]
¡û
>C10112218
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1668060
1667986
-
Glu
TTC
[Ensembl]
¡û
>W11112503
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
372643
372717
+
Glu
TTC
[ENA]
¡û
>W1710505290
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
1086631
1086705
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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