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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374802 (65 seq.)
>W1710785163
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
274301
274375
+
Glu
TTC
[ENA]
¡û
>W1710869485
LMJT01000016
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
104937
105011
+
Glu
TTC
[ENA]
¡û
>W1710879531
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
907728
907654
-
Glu
TTC
[ENA]
¡û
>W1710893362
LNER01000250
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
332
258
-
Glu
TTC
[ENA]
¡û
>W1711072933
LSIB01000059
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
28846
28920
+
Glu
TTC
[ENA]
¡û
>W1711073126
LSIG01000072
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
10378
10304
-
Glu
TTC
[ENA]
¡û
>W1711073303
LSIK01000211
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
25647
25721
+
Glu
TTC
[ENA]
¡û
>W1711074356
LSJL01000120
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
18020
18094
+
Glu
TTC
[ENA]
¡û
>W1711074527
LSJP01000451
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
6484
6558
+
Glu
TTC
[ENA]
¡û
>W1711074587
LSJR01000084
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11847
11773
-
Glu
TTC
[ENA]
¡û
>W1711074742
LSJU01001152
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
11841
11767
-
Glu
TTC
[ENA]
¡û
>W1711074766
LSJV01000087
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
11847
11773
-
Glu
TTC
[ENA]
¡û
>W1711075581
LSKN01000244
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
18036
18110
+
Glu
TTC
[ENA]
¡û
>W1711385480
MEEG01000159
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
13101
13027
-
Glu
TTC
[ENA]
¡û
>W1711385487
MEEG01000226
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
8234
8308
+
Glu
TTC
[ENA]
¡û
>C171049961
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2391315
2391389
+
Glu
TTC
-
¡û
>C171057738
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
3751039
3751113
+
Glu
TTC
-
¡û
>WENV181166558
OEIU01000619
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
21217
21291
+
Glu
TTC
[ENA]
¡û
>WENV181223578
OFDC01036921
[OFDC] hot springs metagenome; Water
566
640
+
Glu
TTC
[ENA]
¡û
>WENV181227630
OFDN01023980
[OFDN] hot springs metagenome; Water
1609
1535
-
Glu
TTC
[ENA]
¡û
>WENV181415076
OGCL01003626
[OGCL] hot springs metagenome; Hot spring water
6436
6362
-
Glu
TTC
[ENA]
¡û
>WENV181415448
OGCL01011145
[OGCL] hot springs metagenome; Hot spring water
3101
3027
-
Glu
TTC
[ENA]
¡û
>WENV170680592
LFEF01001010
[LFEF] freshwater metagenome; waterbloom
149
223
+
Glu
TTC
[ENA]
¡û
>WENV170711603
LNFM01005997
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22692
22618
-
Glu
TTC
[ENA]
¡û
>WENV171003181
NNBT01002181
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
19410
19484
+
Glu
TTC
[ENA]
¡û
>WENV171003783
NNBV01000766
[NNBV] plant metagenome; symbiotic tissue sample KVS11
107744
107818
+
Glu
TTC
[ENA]
¡û
>W141805286
JPKG01000007
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
71696
71770
+
Glu
TTC
[ENA]
¡û
>W141815820
JQJJ01000012
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
146370
146296
-
Glu
TTC
[ENA]
¡û
>W1810252016
PQFZ01000007
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
6036
5962
-
Glu
TTC
[ENA]
¡û
>W1810463369
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
5334546
5334472
-
Glu
TTC
[ENA]
¡û
>W1810783322
QQTO01000033
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
249830
249904
+
Glu
TTC
[ENA]
¡û
>W1810783347
QQTP01000006
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
66779
66705
-
Glu
TTC
[ENA]
¡û
>W2010370637
CAHJXE010000015
Alphaproteobacteria
Rhizobiales bacterium [CAHJXE]
762
836
+
Glu
TTC
[ENA]
¡û
>W2010700098
JACHFP010000004
Alphaproteobacteria
Bosea sp. DSM 102914 [JACHFP]
414821
414747
-
Glu
TTC
[ENA]
¡û
>W2011625836
SLZF01000005
Alphaproteobacteria
Bosea sp. BK604 [SLZF]
11113
11039
-
Glu
TTC
[ENA]
¡û
>W2011647815
SNWJ01000014
Alphaproteobacteria
Bosea sp. BK498 [SNWJ]
83190
83116
-
Glu
TTC
[ENA]
¡û
>W2011773180
UBPT01000005
Alphaproteobacteria
Rhizobiales bacterium [UBPT]
244758
244832
+
Glu
TTC
[ENA]
¡û
>W2011783847
UBZE01000010
Alphaproteobacteria
Rhizobiales bacterium [UBZE]
14524
14598
+
Glu
TTC
[ENA]
¡û
>W2011784207
UBZM01000032
Alphaproteobacteria
Rhizobiales bacterium [UBZM]
73509
73583
+
Glu
TTC
[ENA]
¡û
>W2011787000
UCBZ01000062
Alphaproteobacteria
Rhizobiales bacterium [UCBZ]
31816
31742
-
Glu
TTC
[ENA]
¡û
>W2012022465
VFQA01000002
Alphaproteobacteria
Bosea vestrisii 3192 [VFQA]
285909
285983
+
Glu
TTC
[ENA]
¡û
>W2110284848
JACXWY010000002
Alphaproteobacteria
Bosea sp. SSUT16 [JACXWY]
277781
277855
+
Glu
TTC
[ENA]
¡û
>C231458579
CP102772
Alphaproteobacteria
Bosea sp. NBC_00550 [CP102772]
595398
595472
+
Glu
TTC
-
¡û
>C241320919
CP134779
Alphaproteobacteria
Bosea sp. 685 [CP134779]
3329912
3329838
-
Glu
TTC
-
¡û
>C161070667
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
849942
850016
+
Glu
TTC
[Ensembl]
¡û
>W1610550612
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
171825
171899
+
Glu
TTC
[ENA]
¡û
>W1610617166
LGSZ01000031
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
133036
132962
-
Glu
TTC
[ENA]
¡û
>W1610648969
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
274301
274375
+
Glu
TTC
[ENA]
¡û
>W1610731831
LMJT01000016
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
104937
105011
+
Glu
TTC
[ENA]
¡û
>W1610741877
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
907728
907654
-
Glu
TTC
[ENA]
¡û
>W1610753628
LNER01000250
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
332
258
-
Glu
TTC
[ENA]
¡û
>W1610912193
LSIB01000059
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
28846
28920
+
Glu
TTC
[ENA]
¡û
>W1610912431
LSIG01000072
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
10378
10304
-
Glu
TTC
[ENA]
¡û
>W1610912608
LSIK01000211
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
25647
25721
+
Glu
TTC
[ENA]
¡û
>W1610913661
LSJL01000120
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
18020
18094
+
Glu
TTC
[ENA]
¡û
>W1610913832
LSJP01000451
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
6484
6558
+
Glu
TTC
[ENA]
¡û
>W1610913892
LSJR01000084
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11847
11773
-
Glu
TTC
[ENA]
¡û
>W1610914047
LSJU01001152
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
11841
11767
-
Glu
TTC
[ENA]
¡û
>W1610914071
LSJV01000087
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
11847
11773
-
Glu
TTC
[ENA]
¡û
>W1610914886
LSKN01000244
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
18036
18110
+
Glu
TTC
[ENA]
¡û
>W1710064195
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
5455517
5455443
-
Glu
TTC
[ENA]
¡û
>W1710538965
FNUY01000010
Alphaproteobacteria
Bosea lathyri [FNUY]
151551
151625
+
Glu
TTC
[ENA]
¡û
>W1710564894
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
315305
315379
+
Glu
TTC
[ENA]
¡û
>W1710660447
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
171825
171899
+
Glu
TTC
[ENA]
¡û
>W1710742780
LGSZ01000031
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
133036
132962
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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