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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374962 (116 seq.)
>W1710860481
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
1002008
1002080
+
Arg
CCT
[ENA]
¡û
>W1710865445
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1814383
1814309
-
Arg
CCT
[ENA]
¡û
>W1710870583
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1437895
1437969
+
Arg
CCT
[ENA]
¡û
>W1710872744
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2132929
2132857
-
Arg
CCT
[ENA]
¡û
>W1710873160
LMMO01000004
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
726018
726092
+
Arg
CCT
[ENA]
¡û
>W1710873259
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
1058361
1058287
-
Arg
CCT
[ENA]
¡û
>W1710876669
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
150245
150171
-
Arg
CCT
[ENA]
¡û
>W1710879773
LMRW01000028
Actinomycetota
Agromyces sp. Soil535 [LMRW]
172074
172148
+
Arg
CCT
[ENA]
¡û
>W131110270
APJN01000021
Actinomycetota
Curtobacterium flaccumfaciens UCD-AKU [APJN]
32949
32875
-
Arg
CCT
[ENA]
¡û
>W131161924
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
251646
251718
+
Arg
CCT
[ENA]
¡û
>W131162276
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
704430
704358
-
Arg
CCT
[ENA]
¡û
>W131184977
ARTJ01000002
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
204729
204803
+
Arg
CCT
[ENA]
¡û
>W1711318573
MAYO01000002
Actinomycetota
Microbacterium oleivorans [MAYO]
401903
401975
+
Arg
CCT
[ENA]
¡û
>W1711343391
MCIG01000052
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
10633
10559
-
Arg
CCT
[ENA]
¡û
>W1711357159
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
572586
572658
+
Arg
CCT
[ENA]
¡û
>W1711357387
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1107321
1107393
+
Arg
CCT
[ENA]
¡û
>W1711456012
MJAK01000011
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
93282
93356
+
Arg
CCT
[ENA]
¡û
>W1711460943
MJGJ01000010
Actinomycetota
Curtobacterium sp. MCBA15_003 [MJGJ]
66857
66783
-
Arg
CCT
[ENA]
¡û
>W1711461014
MJGL01000001
Actinomycetota
Curtobacterium sp. MCBA15_005 [MJGL]
60176
60250
+
Arg
CCT
[ENA]
¡û
>W1711461459
MJGU01000024
Actinomycetota
Curtobacterium sp. MMLR14_006 [MJGU]
66211
66137
-
Arg
CCT
[ENA]
¡û
>W1711461483
MJGV01000026
Actinomycetota
Curtobacterium sp. MMLR14_010 [MJGV]
101947
101873
-
Arg
CCT
[ENA]
¡û
>W1711461538
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
557097
557025
-
Arg
CCT
[ENA]
¡û
>W1711724733
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
1062601
1062527
-
Arg
CCT
[ENA]
¡û
>C171063800
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
2184103
2184177
+
Arg
CCT
-
¡û
>WENV180017050
FSWJ01000914
[FSWJ] metagenome; soil
1073
1001
-
Arg
CCT
[ENA]
¢þ
>WENV180017267
FSWR01000035
[FSWR] metagenome; soil
41275
41203
-
Arg
CCT
[ENA]
¢þ
>WENV180023759
FTIF01000083
[FTIF] metagenome; soil
713
641
-
Arg
CCT
[ENA]
¢þ
>WENV180024245
FTIF01349134
[FTIF] metagenome; soil
118
190
+
Arg
CCT
[ENA]
¢þ
>WENV180034787
FTKR01325291
[FTKR] metagenome; soil
293
219
-
Arg
CCT
[ENA]
¢þ
>WENV180036140
FTLB01420183
[FTLB] metagenome; soil
170
98
-
Arg
CCT
[ENA]
¢þ
>WENV180103043
OAPA01000461
[OAPA] marine metagenome; ENVO:00002010
1203
1275
+
Arg
CCT
[ENA]
¢þ
>WENV180114225
OAPS01000924
[OAPS] marine metagenome; sea water
2377
2305
-
Arg
CCT
[ENA]
¢þ
>WENV180212494
OBAN01066790
[OBAN] marine metagenome; ENVO 00002150
293
221
-
Arg
CCT
[ENA]
¢þ
>WENV180359618
OBNS01006484
[OBNS] marine metagenome; Seawater
475
547
+
Arg
CCT
[ENA]
¢þ
>WENV180394455
OBPS01006939
[OBPS] marine metagenome; ENVO:00002010 seawater
872
798
-
Arg
CCT
[ENA]
¢þ
>WENV180395097
OBPT01001413
[OBPT] marine metagenome; ENVO:00002010 seawater
4765
4691
-
Arg
CCT
[ENA]
¢þ
>WENV181400967
OFSF01037845
[OFSF] wastewater metagenome; Exp Tend VB 100WW
660
587
-
Arg
CCT
[ENA]
¢þ
>WENV019075
AACY020525381
Marine microbial communities from Global Ocean Sampling (GOS)
1086
1162
+
Arg
CCT
[ENA]
>WENV019712
AACY020537583
Marine microbial communities from Global Ocean Sampling (GOS)
1689
1765
+
Arg
CCT
[ENA]
>WENV183728510
PJTQ01000097
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
137649
137721
+
Arg
CCT
[ENA]
¢þ
>WENV170252549
CEQU01014665
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5670
5742
+
Arg
CCT
[ENA]
¢þ
>WENV170837978
MDSZ01159143
[MDSZ] marine metagenome; seawater
7069
7143
+
Arg
CCT
[ENA]
¢þ
>C181048909
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
681851
681777
-
Arg
CCT
-
¡û
>C181048934
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2641206
2641280
+
Arg
CCT
-
¡û
>C191011696
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
513661
513734
+
Arg
CCT
-
¡û
>C191055989
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
3094700
3094626
-
Arg
CCT
-
¡û
>C191074815
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
2022597
2022524
-
Arg
CCT
-
¡û
>WENV021975
AACY020611790
Marine microbial communities from Global Ocean Sampling (GOS)
66
140
+
Arg
CCT
[ENA]
>C191143816
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
1749867
1749941
+
Arg
CCT
-
¡û
>W141565015
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
254655
254729
+
Arg
CCT
[ENA]
¡û
>W1910832059
MYFP01000020
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
42103
42029
-
Arg
CCT
[ENA]
¡û
>W1910839774
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
793749
793675
-
Arg
CCT
[ENA]
¡û
>W1910839815
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1610612
1610539
-
Arg
CCT
[ENA]
¡û
>W1911682148
QKLJ01000011
Actinomycetota
Curtobacterium sp. MCBD17_023 [QKLJ]
30882
30955
+
Arg
CCT
[ENA]
¡û
>W1911685046
QKSD01000015
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
16349
16423
+
Arg
CCT
[ENA]
¡û
>W1911685322
QKSJ01000014
Actinomycetota
Curtobacterium sp. MCPF17_018 [QKSJ]
14448
14522
+
Arg
CCT
[ENA]
¡û
>W1911685571
QKTM01000008
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
50133
50207
+
Arg
CCT
[ENA]
¡û
>W1911685668
QKTO01000010
Actinomycetota
Curtobacterium sp. MCBD17_032 [QKTO]
52278
52205
-
Arg
CCT
[ENA]
¡û
>W1911685811
QKTS01000001
Actinomycetota
Curtobacterium sp. MCBD17_021 [QKTS]
51033
50959
-
Arg
CCT
[ENA]
¡û
>W1911685929
QKTU01000007
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
119743
119669
-
Arg
CCT
[ENA]
¡û
>W1911748243
QWEB01000135
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
2523
2450
-
Arg
CCT
[ENA]
¡û
>W1911749580
QWGS01000045
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
6746
6673
-
Arg
CCT
[ENA]
¡û
>W1810242689
PPXF01000038
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
25413
25486
+
Arg
CCT
[ENA]
¡û
>W1810503476
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
401973
401900
-
Arg
CCT
[ENA]
¡û
>W1810627275
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
1738943
1738869
-
Arg
CCT
[ENA]
¡û
>W1810675557
QKLG01000002
Actinomycetota
Curtobacterium sp. MCJR17_043 [QKLG]
55358
55285
-
Arg
CCT
[ENA]
¡û
>W1810681015
QKSN01000015
Actinomycetota
Curtobacterium sp. MCSS17_007 [QKSN]
4932
4858
-
Arg
CCT
[ENA]
¡û
>W1810681173
QKSQ01000022
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
16692
16766
+
Arg
CCT
[ENA]
¡û
>W1810681728
QKTC01000012
Actinomycetota
Curtobacterium sp. MCLR17_044 [QKTC]
56361
56289
-
Arg
CCT
[ENA]
¡û
>W1810681881
QKTF01000018
Actinomycetota
Curtobacterium sp. MCLR17_039 [QKTF]
14492
14566
+
Arg
CCT
[ENA]
¡û
>W1810762688
QQAO01000002
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
405420
405494
+
Arg
CCT
[ENA]
¡û
>W1810860804
QTTK01000003
Actinomycetota
Clavibacter sp. 199 [QTTK]
11057
10984
-
Arg
CCT
[ENA]
¡û
>W1810861617
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
4288241
4288170
-
Arg
CCT
[ENA]
¡û
>SRA1052615
SRR035098.237742
454 Sequencing (SRP001819)
320
392
+
Arg
CCT
[SRA]
>WENV035365
AACY021689664
Marine microbial communities from Global Ocean Sampling (GOS)
187
263
+
Arg
CCT
[ENA]
>WENV037239
AACY021842933
Marine microbial communities from Global Ocean Sampling (GOS)
448
524
+
Arg
CCT
[ENA]
>W1511509137
JXQU01000033
Actinomycetota
Curtobacterium flaccumfaciens MEB126 [JXQU]
72529
72455
-
Arg
CCT
[ENA]
¡û
>W1511528870
JYIY01000049
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
3561
3635
+
Arg
CCT
[ENA]
¡û
>WENV047267
AACY022651438
Marine microbial communities from Global Ocean Sampling (GOS)
543
467
-
Arg
CCT
[ENA]
>WENV047280
AACY022652796
Marine microbial communities from Global Ocean Sampling (GOS)
207
131
-
Arg
CCT
[ENA]
>C161021917
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
3012310
3012236
-
Arg
CCT
[Ensembl]
¡û
>C161073117
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1451400
1451474
+
Arg
CCT
[Ensembl]
¡û
>C161076871
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1286436
1286364
-
Arg
CCT
[Ensembl]
¡û
>WENV069969
AACY023791142
Marine microbial communities from Global Ocean Sampling (GOS)
1357
1281
-
Arg
CCT
[ENA]
>WENV070144
AACY023798905
Marine microbial communities from Global Ocean Sampling (GOS)
291
215
-
Arg
CCT
[ENA]
>WENV070411
AACY023808002
Marine microbial communities from Global Ocean Sampling (GOS)
470
394
-
Arg
CCT
[ENA]
>WENV070741
AACY023820765
Marine microbial communities from Global Ocean Sampling (GOS)
1198
1274
+
Arg
CCT
[ENA]
>WENV070826
AACY023824584
Marine microbial communities from Global Ocean Sampling (GOS)
762
838
+
Arg
CCT
[ENA]
>WENV071027
AACY023832330
Marine microbial communities from Global Ocean Sampling (GOS)
1347
1423
+
Arg
CCT
[ENA]
>C131019540
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
2535674
2535748
+
Arg
CCT
[Ensembl]
¡û
>WENV071339
AACY023843600
Marine microbial communities from Global Ocean Sampling (GOS)
1012
1088
+
Arg
CCT
[ENA]
>W1610588210
LDQB01000007
Actinomycetota
Curtobacterium citreum [LDQB]
22238
22164
-
Arg
CCT
[ENA]
¡û
>W1610588290
LDQC01000110
Actinomycetota
Curtobacterium luteum [LDQC]
5242
5168
-
Arg
CCT
[ENA]
¡û
>W1610590002
LDRB01000071
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
2795
2867
+
Arg
CCT
[ENA]
¡û
>W1610597642
LFFC01000007
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
2172
2100
-
Arg
CCT
[ENA]
¡û
>W1610625664
LIAY01000008
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
4186
4258
+
Arg
CCT
[ENA]
¡û
>W1610722827
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
1002008
1002080
+
Arg
CCT
[ENA]
¡û
>W1610727791
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1814383
1814309
-
Arg
CCT
[ENA]
¡û
>W1610732929
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1437895
1437969
+
Arg
CCT
[ENA]
¡û
>W1610735090
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2132929
2132857
-
Arg
CCT
[ENA]
¡û
>W1610735506
LMMO01000004
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
726018
726092
+
Arg
CCT
[ENA]
¡û
>W1610735605
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
1058361
1058287
-
Arg
CCT
[ENA]
¡û
>W1610739015
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
150245
150171
-
Arg
CCT
[ENA]
¡û
>W1610742119
LMRW01000028
Actinomycetota
Agromyces sp. Soil535 [LMRW]
172074
172148
+
Arg
CCT
[ENA]
¡û
>W1611061916
MAYO01000002
Actinomycetota
Microbacterium oleivorans [MAYO]
401903
401975
+
Arg
CCT
[ENA]
¡û
>W1710526359
FNKG01000001
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
76146
76074
-
Arg
CCT
[ENA]
¡û
>W1710568285
FOTM01000015
Actinomycetota
Leifsonia sp. CL147 [FOTM]
70542
70470
-
Arg
CCT
[ENA]
¡û
>W1710575729
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
1125858
1125930
+
Arg
CCT
[ENA]
¡û
>W1710599960
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
650976
651050
+
Arg
CCT
[ENA]
¡û
>W1710603942
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1586287
1586359
+
Arg
CCT
[ENA]
¡û
>W1710609358
FXWJ01000004
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
50465
50391
-
Arg
CCT
[ENA]
¡û
>W1710707490
LDQB01000007
Actinomycetota
Curtobacterium citreum [LDQB]
22238
22164
-
Arg
CCT
[ENA]
¡û
>W1710707570
LDQC01000110
Actinomycetota
Curtobacterium luteum [LDQC]
5242
5168
-
Arg
CCT
[ENA]
¡û
>W1710709282
LDRB01000071
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
2795
2867
+
Arg
CCT
[ENA]
¡û
>W1710718889
LFFC01000007
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
2172
2100
-
Arg
CCT
[ENA]
¡û
>W1710756791
LIAY01000008
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
4186
4258
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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