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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375009 (54 seq.)
>W1710862887
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
422121
422047
-
Val
GAC
[ENA]
¡û
>W1710934829
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343533
5343607
+
Val
GAC
[ENA]
¡û
>W131222375
AUBF01000004
Actinomycetota
Schaalia suimastitidis DSM 15538 [AUBF]
406270
406344
+
Val
GAC
[ENA]
¡û
>W131242144
CAAH010000101
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
12285
12357
+
Val
GAC
[ENA]
¡û
>W131242183
CAAO010000112
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
89133
89205
+
Val
GAC
[ENA]
¡û
>W131249980
CAUF01000105
Actinomycetota
Tropheryma whipplei str. Art1 [CAUF]
89123
89195
+
Val
GAC
[ENA]
¡û
>W131250373
CAUP010000093
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
89138
89210
+
Val
GAC
[ENA]
¡û
>W131250415
CAUQ010000082
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
89138
89210
+
Val
GAC
[ENA]
¡û
>W131250457
CAUR010000085
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
89142
89214
+
Val
GAC
[ENA]
¡û
>W131250499
CAUS010000085
Actinomycetota
Tropheryma whipplei str. Endo27 [CAUS]
89142
89214
+
Val
GAC
[ENA]
¡û
>W131250624
CAUV010000103
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
89126
89198
+
Val
GAC
[ENA]
¡û
>W131250666
CAUW010000095
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
89140
89212
+
Val
GAC
[ENA]
¡û
>W131250708
CAUX010000082
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
89137
89209
+
Val
GAC
[ENA]
¡û
>W131250791
CAVA010000085
Actinomycetota
Tropheryma whipplei str. DigMusc17 [CAVA]
89138
89210
+
Val
GAC
[ENA]
¡û
>W131250833
CAVB010000094
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
89135
89207
+
Val
GAC
[ENA]
¡û
>W131165205
ARBJ01000051
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
26779
26853
+
Val
GAC
[ENA]
¡û
>C171131326
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7711580
7711506
-
Val
GAC
-
¡û
>C171131329
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7672039
7671965
-
Val
GAC
-
¡û
>C026001
BX072543
Actinomycetota
Tropheryma whipplei [BX072543]
412209
412138
-
Val
GAC
[Ensembl]
¡û
>C026024
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
481122
481193
+
Val
GAC
[Ensembl]
¡û
>WENV181171499
OEIV010250638
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
155
228
+
Val
GAC
[ENA]
¢þ
>WENV183716235
PDWI01296237
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2007
2081
+
Val
GAC
[ENA]
¢þ
>W09121397
ACFG01000034
Actinomycetota
Gleimia coleocanis DSM 15436 [ACFG]
142720
142648
-
Val
GAC
[ENA]
¡û
>C181078610
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7710764
7710690
-
Val
GAC
-
¡û
>C181078613
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7671223
7671149
-
Val
GAC
-
¡û
>W141758315
JNYN01001277
Actinomycetota
Actinoplanes liguriensis [JNYN]
87
161
+
Val
GAC
[ENA]
¡û
>W141758673
JNYT01001835
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
76
2
-
Val
GAC
[ENA]
¡û
>W1910236996
FPJH01000008
Actinomycetota
Arcanobacterium urinimassiliense Marseille-P3248 [FPJH]
159605
159531
-
Val
GAC
[ENA]
¡û
>W1910547311
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
253078
253004
-
Val
GAC
[ENA]
¡û
>W1910547314
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
196767
196693
-
Val
GAC
[ENA]
¡û
>W1911676726
QHHV01000234
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
1125
1053
-
Val
GAC
[ENA]
¡û
>W1810356518
PVMZ01000006
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
162896
162822
-
Val
GAC
[ENA]
¡û
>W1810368166
PVZG01000016
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
175579
175653
+
Val
GAC
[ENA]
¡û
>W1810595116
QGDQ01000012
Actinomycetota
Quadrisphaera granulorum DSM 44889 [QGDQ]
69832
69906
+
Val
GAC
[ENA]
¡û
>W1810596600
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
701102
701028
-
Val
GAC
[ENA]
¡û
>W1810596603
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
686547
686473
-
Val
GAC
[ENA]
¡û
>W1810694909
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
13312
13384
+
Val
GAC
[ENA]
¡û
>W1810694912
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
22993
23065
+
Val
GAC
[ENA]
¡û
>ENV09003096
ADGO01004494
Compost metagenome contig00001
414
340
-
Val
GAC
[ENA]
¡û
>C10100454
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
912042
912114
+
Val
GAC
[Ensembl]
¡û
>C10100456
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
912278
912352
+
Val
GAC
[Ensembl]
¡û
>W1511355833
JRTT01000022
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
93500
93574
+
Val
GAC
[ENA]
¡û
>W1511355836
JRTT01000022
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
104047
104121
+
Val
GAC
[ENA]
¡û
>W1511545111
JZKF01000019
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
24
98
+
Val
GAC
[ENA]
¡û
>W1511545130
JZKF01000071
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
47911
47837
-
Val
GAC
[ENA]
¡û
>W1511545151
JZKF01000290
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
195
269
+
Val
GAC
[ENA]
¡û
>C121001061
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7297924
7297850
-
Val
GAC
[Ensembl]
¡û
>C121001064
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7287501
7287427
-
Val
GAC
[Ensembl]
¡û
>W1610069667
BCSR01000013
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
36175
36101
-
Val
GAC
[ENA]
¡û
>W1610725233
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
422121
422047
-
Val
GAC
[ENA]
¡û
>W1610792317
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343533
5343607
+
Val
GAC
[ENA]
¡û
>W1710067040
BCSR01000013
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
36175
36101
-
Val
GAC
[ENA]
¡û
>W1710526091
FNKA01000002
Actinomycetota
Quadrisphaera sp. DSM 44207 [FNKA]
694627
694553
-
Val
GAC
[ENA]
¡û
>W1710544079
FOAO01000012
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
130181
130255
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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