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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375391 (96 seq.)
>W1710999853
LQDW01000003
Gammaproteobacteria
Pasteurella multocida [LQDW]
266750
266824
+
Gln
TTG
[ENA]
¡û
>W1711000689
LQEP01000135
Gammaproteobacteria
Mannheimia haemolytica [LQEP]
146563
146489
-
Gln
TTG
[ENA]
¡û
>W1711001406
LQFG01000114
Gammaproteobacteria
Mannheimia haemolytica [LQFG]
61238
61312
+
Gln
TTG
[ENA]
¡û
>W1711001407
LQFG01000114
Gammaproteobacteria
Mannheimia haemolytica [LQFG]
61367
61441
+
Gln
TTG
[ENA]
¡û
>W1711001839
LQFQ01000078
Gammaproteobacteria
Mannheimia haemolytica [LQFQ]
146696
146622
-
Gln
TTG
[ENA]
¡û
>W1711001840
LQFQ01000078
Gammaproteobacteria
Mannheimia haemolytica [LQFQ]
146567
146493
-
Gln
TTG
[ENA]
¡û
>W1711002051
LQFV01000036
Gammaproteobacteria
Pasteurella multocida [LQFV]
257270
257344
+
Gln
TTG
[ENA]
¡û
>W1711002052
LQFV01000036
Gammaproteobacteria
Pasteurella multocida [LQFV]
257390
257464
+
Gln
TTG
[ENA]
¡û
>W1711002372
LQGD01000003
Gammaproteobacteria
Histophilus somni [LQGD]
47881
47955
+
Gln
TTG
[ENA]
¡û
>W1711002373
LQGD01000003
Gammaproteobacteria
Histophilus somni [LQGD]
48002
48076
+
Gln
TTG
[ENA]
¡û
>W1711003037
LQGS01000041
Gammaproteobacteria
Pasteurella multocida [LQGS]
266431
266505
+
Gln
TTG
[ENA]
¡û
>W1711003038
LQGS01000041
Gammaproteobacteria
Pasteurella multocida [LQGS]
266551
266625
+
Gln
TTG
[ENA]
¡û
>W1711282325
LZMX01000030
Gammaproteobacteria
Haemophilus parainfluenzae [LZMX]
456338
456264
-
Gln
TTG
[ENA]
¡û
>W1711282326
LZMX01000030
Gammaproteobacteria
Haemophilus parainfluenzae [LZMX]
456216
456142
-
Gln
TTG
[ENA]
¡û
>W1711308727
MAQE01000015
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
134437
134511
+
Gln
TTG
[ENA]
¡û
>W1711308728
MAQE01000015
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
134549
134623
+
Gln
TTG
[ENA]
¡û
>W1711509745
MKZZ01000008
Gammaproteobacteria
Rodentibacter pneumotropicus [MKZZ]
29025
29099
+
Gln
TTG
[ENA]
¡û
>W1711719792
MTIL01000002
Gammaproteobacteria
Pasteurella multocida subsp. septica [MTIL]
107506
107432
-
Gln
TTG
[ENA]
¡û
>W131181366
ARNX01000008
Gammaproteobacteria
Pasteurella multocida 93002 [ARNX]
12626
12552
-
Gln
TTG
[ENA]
¡û
>W131165826
ARBW01000015
Gammaproteobacteria
Rodentibacter pneumotropicus DSM 21403 [ARBW]
45271
45197
-
Gln
TTG
[ENA]
¡û
>W131165827
ARBW01000015
Gammaproteobacteria
Rodentibacter pneumotropicus DSM 21403 [ARBW]
45150
45076
-
Gln
TTG
[ENA]
¡û
>C022520
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197605
1197679
+
Gln
TTG
[Ensembl]
¡û
>C022521
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197702
1197776
+
Gln
TTG
[Ensembl]
¡û
>WENV180408378
OBUS01000974
[OBUS] human gut metagenome; faeces
9146
9220
+
Gln
TTG
[ENA]
¢þ
>WENV180450038
OBXH01001517
[OBXH] human gut metagenome; faeces
7668
7742
+
Gln
TTG
[ENA]
¢þ
>WENV180476912
OBYZ01000055
[OBYZ] human gut metagenome; faeces
127993
127919
-
Gln
TTG
[ENA]
¢þ
>WENV180476913
OBYZ01000055
[OBYZ] human gut metagenome; faeces
127871
127797
-
Gln
TTG
[ENA]
¢þ
>WENV180482857
OBZG01017755
[OBZG] human gut metagenome; faeces
174
100
-
Gln
TTG
[ENA]
¢þ
>WENV180601051
OCPQ01005453
[OCPQ] human gut metagenome; faeces
102
176
+
Gln
TTG
[ENA]
¢þ
>WENV180754625
ODHU01000083
[ODHU] human metagenome; G_DNA_Supragingival plaque
2377
2303
-
Gln
TTG
[ENA]
¢þ
>WENV180754626
ODHU01000083
[ODHU] human metagenome; G_DNA_Supragingival plaque
2255
2181
-
Gln
TTG
[ENA]
¢þ
>WENV180764051
ODIA01015525
[ODIA] human metagenome; G_DNA_Tongue dorsum
933
859
-
Gln
TTG
[ENA]
¢þ
>WENV180764052
ODIA01015525
[ODIA] human metagenome; G_DNA_Tongue dorsum
811
737
-
Gln
TTG
[ENA]
¢þ
>WENV180764053
ODIA01015525
[ODIA] human metagenome; G_DNA_Tongue dorsum
689
615
-
Gln
TTG
[ENA]
¢þ
>W141082099
ATSY01000001
Gammaproteobacteria
Mannheimia haemolytica D193 [ATSY]
72954
72880
-
Gln
TTG
[ENA]
¡û
>W141082100
ATSY01000001
Gammaproteobacteria
Mannheimia haemolytica D193 [ATSY]
72825
72751
-
Gln
TTG
[ENA]
¡û
>WENV180887330
ODMI01000137
[ODMI] human metagenome; G_DNA_Buccal mucosa
197
271
+
Gln
TTG
[ENA]
¢þ
>WENV180912702
ODSM01000043
[ODSM] human metagenome; G_DNA_Buccal mucosa
20915
20841
-
Gln
TTG
[ENA]
¢þ
>WENV180912703
ODSM01000043
[ODSM] human metagenome; G_DNA_Buccal mucosa
20793
20719
-
Gln
TTG
[ENA]
¢þ
>WENV180923572
ODTK01000026
[ODTK] human metagenome; G_DNA_Supragingival plaque
3
77
+
Gln
TTG
[ENA]
¢þ
>WENV180923640
ODTK01000059
[ODTK] human metagenome; G_DNA_Supragingival plaque
95163
95237
+
Gln
TTG
[ENA]
¢þ
>WENV180923641
ODTK01000059
[ODTK] human metagenome; G_DNA_Supragingival plaque
95285
95359
+
Gln
TTG
[ENA]
¢þ
>WENV180923726
ODTK01000107
[ODTK] human metagenome; G_DNA_Supragingival plaque
74366
74440
+
Gln
TTG
[ENA]
¢þ
>WENV180924307
ODTK01002974
[ODTK] human metagenome; G_DNA_Supragingival plaque
7742
7668
-
Gln
TTG
[ENA]
¢þ
>WENV180937626
ODTX01000010
[ODTX] human metagenome; G_DNA_Supragingival plaque
121301
121375
+
Gln
TTG
[ENA]
¢þ
>WENV180937627
ODTX01000010
[ODTX] human metagenome; G_DNA_Supragingival plaque
121423
121497
+
Gln
TTG
[ENA]
¢þ
>WENV180939881
ODTX01119478
[ODTX] human metagenome; G_DNA_Supragingival plaque
360
286
-
Gln
TTG
[ENA]
¢þ
>WENV180964013
ODUO01000103
[ODUO] human metagenome; G_DNA_Supragingival plaque
32703
32629
-
Gln
TTG
[ENA]
¢þ
>WENV180965095
ODUO01146746
[ODUO] human metagenome; G_DNA_Supragingival plaque
3
77
+
Gln
TTG
[ENA]
¢þ
>WENV180999961
ODVT01119197
[ODVT] human metagenome; G_DNA_Buccal mucosa
179
105
-
Gln
TTG
[ENA]
¢þ
>WENV181012596
ODWK01001925
[ODWK] human metagenome; G_DNA_Supragingival plaque
1586
1512
-
Gln
TTG
[ENA]
¢þ
>WENV181012597
ODWK01001925
[ODWK] human metagenome; G_DNA_Supragingival plaque
1464
1390
-
Gln
TTG
[ENA]
¢þ
>WENV181012911
ODWK01080274
[ODWK] human metagenome; G_DNA_Supragingival plaque
4
78
+
Gln
TTG
[ENA]
¢þ
>WENV181020559
ODWV01000003
[ODWV] human metagenome; G_DNA_Tongue dorsum
203902
203828
-
Gln
TTG
[ENA]
¢þ
>WENV181020560
ODWV01000003
[ODWV] human metagenome; G_DNA_Tongue dorsum
203780
203706
-
Gln
TTG
[ENA]
¢þ
>WENV181030114
ODXF01038474
[ODXF] human metagenome; G_DNA_Supragingival plaque
453
527
+
Gln
TTG
[ENA]
¢þ
>WENV181042397
ODXU01000015
[ODXU] human metagenome; G_DNA_Buccal mucosa
28434
28360
-
Gln
TTG
[ENA]
¢þ
>WENV181042398
ODXU01000015
[ODXU] human metagenome; G_DNA_Buccal mucosa
28312
28238
-
Gln
TTG
[ENA]
¢þ
>WENV181114858
OEEO01007638
[OEEO] human metagenome; G_DNA_Supragingival plaque
2569
2643
+
Gln
TTG
[ENA]
¢þ
>WENV181114859
OEEO01007638
[OEEO] human metagenome; G_DNA_Supragingival plaque
2691
2765
+
Gln
TTG
[ENA]
¢þ
>WENV181114860
OEEO01007638
[OEEO] human metagenome; G_DNA_Supragingival plaque
2813
2887
+
Gln
TTG
[ENA]
¢þ
>WENV181145845
OEHQ01000154
[OEHQ] human metagenome; G_DNA_Supragingival plaque
13528
13454
-
Gln
TTG
[ENA]
¢þ
>WENV181145846
OEHQ01000154
[OEHQ] human metagenome; G_DNA_Supragingival plaque
13406
13332
-
Gln
TTG
[ENA]
¢þ
>WENV181145847
OEHQ01000154
[OEHQ] human metagenome; G_DNA_Supragingival plaque
13284
13210
-
Gln
TTG
[ENA]
¢þ
>WENV181175175
OEJP01080035
[OEJP] human metagenome; G_DNA_Stool
92
166
+
Gln
TTG
[ENA]
¢þ
>WENV181556119
OGIU01003138
[OGIU] metagenome; Human gut stool
5313
5387
+
Gln
TTG
[ENA]
¢þ
>WENV181563097
OGJG01002218
[OGJG] metagenome; Human gut stool
102
176
+
Gln
TTG
[ENA]
¢þ
>WENV181570698
OGJN01016818
[OGJN] metagenome; Human gut stool
589
515
-
Gln
TTG
[ENA]
¢þ
>WENV182409351
OIFI01000005
[OIFI] human gut metagenome; stool
77953
78027
+
Gln
TTG
[ENA]
¢þ
>WENV182409352
OIFI01000005
[OIFI] human gut metagenome; stool
78075
78149
+
Gln
TTG
[ENA]
¢þ
>WENV182522808
OIWS01001648
[OIWS] human gut metagenome; faeces
15679
15753
+
Gln
TTG
[ENA]
¢þ
>C08005551
CP000947
Gammaproteobacteria
Histophilus somni 2336 [CP000947]
1721704
1721633
-
Gln
TTG
[Ensembl]
¡û
>C08005552
CP000947
Gammaproteobacteria
Histophilus somni 2336 [CP000947]
1721583
1721512
-
Gln
TTG
[Ensembl]
¡û
>WENV182833259
OKER01008834
[OKER] human gut metagenome; human gut
138
212
+
Gln
TTG
[ENA]
¢þ
>WENV182837824
OKGM01001191
[OKGM] human gut metagenome; human gut
126
200
+
Gln
TTG
[ENA]
¢þ
>C181018631
CP015573
Gammaproteobacteria
Pasteurella multocida USDA-ARS-USMARC-60714 [CP015573]
1276995
1276921
-
Gln
TTG
-
¡û
>C181018632
CP015573
Gammaproteobacteria
Pasteurella multocida USDA-ARS-USMARC-60714 [CP015573]
1276875
1276801
-
Gln
TTG
-
¡û
>C181201858
CP031551
Gammaproteobacteria
Pasteurella multocida PM8-1 [CP031551]
2202917
2202991
+
Gln
TTG
-
¡û
>C181225717
LT906463
Gammaproteobacteria
Haemophilus pittmaniae NCTC13334 [LT906463]
2032815
2032741
-
Gln
TTG
-
¡û
>C181225718
LT906463
Gammaproteobacteria
Haemophilus pittmaniae NCTC13334 [LT906463]
2032699
2032625
-
Gln
TTG
-
¡û
>W09104522
AALS01000085
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
406
480
+
Gln
TTG
[ENA]
¡û
>W09104523
AALS01000085
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
506
580
+
Gln
TTG
[ENA]
¡û
>W09104526
AALS01000085
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
940
1014
+
Gln
TTG
[ENA]
¡û
>W1511301137
JPHO01000045
Gammaproteobacteria
Gallibacterium anatis 10672-6 [JPHO]
16428
16354
-
Gln
TTG
[ENA]
¡û
>W1511301138
JPHO01000045
Gammaproteobacteria
Gallibacterium anatis 10672-6 [JPHO]
16326
16252
-
Gln
TTG
[ENA]
¡û
>W1511319590
JPZI01000011
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans RhAA1 RHAA1 [JPZI]
375980
376054
+
Gln
TTG
[ENA]
¡û
>W1511319591
JPZI01000011
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans RhAA1 RHAA1 [JPZI]
376092
376166
+
Gln
TTG
[ENA]
¡û
>W1511320302
JQAE01000006
Gammaproteobacteria
Pasteurella multocida subsp. multocida THA [JQAE]
230441
230367
-
Gln
TTG
[ENA]
¡û
>W1511320303
JQAE01000006
Gammaproteobacteria
Pasteurella multocida subsp. multocida THA [JQAE]
230321
230247
-
Gln
TTG
[ENA]
¡û
>W1511388152
JSVV01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae 780 [JSVV]
33532
33458
-
Gln
TTG
[ENA]
¡û
>W1511388153
JSVV01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae 780 [JSVV]
33409
33335
-
Gln
TTG
[ENA]
¡û
>W1511620480
LCTH01000026
Gammaproteobacteria
Haemophilus haemolyticus 27P25 [LCTH]
7738
7812
+
Gln
TTG
[ENA]
¡û
>W1511620481
LCTH01000026
Gammaproteobacteria
Haemophilus haemolyticus 27P25 [LCTH]
7860
7934
+
Gln
TTG
[ENA]
¡û
>C121010725
CP003313
Gammaproteobacteria
Pasteurella multocida subsp. multocida str. HN06 [CP003313]
794345
794271
-
Gln
TTG
[Ensembl]
¡û
>C131014056
CP004752
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-183 [CP004752]
586965
586891
-
Gln
TTG
[Ensembl]
¡û
>C131014057
CP004752
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-183 [CP004752]
586836
586762
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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