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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375674 (67 seq.)
>W1711050787
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
109956
110030
+
Glu
TTC
[ENA]
¡û
>W1711050788
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
110222
110296
+
Glu
TTC
[ENA]
¡û
>W1711709214
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
847107
847033
-
Glu
TTC
[ENA]
¡û
>W1711709276
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
3870547
3870473
-
Glu
TTC
[ENA]
¡û
>C171035317
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
1607120
1607046
-
Glu
TTC
-
¡û
>C171105938
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
747381
747307
-
Glu
TTC
-
¡û
>W131223026
AUBS01000030
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
2188
2262
+
Glu
TTC
[ENA]
¡û
>W131223028
AUBS01000034
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
674
600
-
Glu
TTC
[ENA]
¡û
>W131241987
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
167424
167498
+
Glu
TTC
[ENA]
¡û
>WENV181323830
OFKZ01010121
[OFKZ] marine metagenome; sea ice
465
391
-
Glu
TTC
[ENA]
¡û
>W141199858
AYXI01000191
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
115
189
+
Glu
TTC
[ENA]
¡û
>WENV183615695
OOEB01095799
[OOEB] marine metagenome; sea ice
73
147
+
Glu
TTC
[ENA]
¡û
>WENV170015946
AZIJ01005198
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
4447
4373
-
Glu
TTC
[ENA]
¡û
>WENV170175752
CEOS01004330
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
147
73
-
Glu
TTC
[ENA]
¡û
>WENV170191494
CEPD01026811
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
412
338
-
Glu
TTC
[ENA]
¡û
>WENV170483111
CEVM01090598
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1263
1189
-
Glu
TTC
[ENA]
¡û
>WENV170655411
JTFN01029858
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
334
260
-
Glu
TTC
[ENA]
¡û
>WENV170655511
JTFN01040070
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
458
532
+
Glu
TTC
[ENA]
¡û
>WENV170655582
JTFN01048231
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
24
98
+
Glu
TTC
[ENA]
¡û
>WENV170655765
JTFN01070544
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
27
101
+
Glu
TTC
[ENA]
¡û
>W141485019
JFZB01000002
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
35830
35904
+
Glu
TTC
[ENA]
¡û
>W09118398
ACCW01000036
Alphaproteobacteria
Rhodobacteraceae bacterium KLH11 [ACCW]
271497
271423
-
Glu
TTC
[ENA]
¡û
>W1910549882
FZQB01000008
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
48214
48140
-
Glu
TTC
[ENA]
¡û
>W1911597536
PNOS01000031
Alphaproteobacteria
Rhodobacteraceae bacterium XY-R6 [PNOS]
4539
4613
+
Glu
TTC
[ENA]
¡û
>W1911747139
QWDA01000002
Alphaproteobacteria
Rhodobacteraceae bacterium IMCC 34051 [QWDA]
469097
469171
+
Glu
TTC
[ENA]
¡û
>W1810633779
QITQ01000007
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
63814
63888
+
Glu
TTC
[ENA]
¡û
>W1810719933
QNQP01000008
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
2197
2123
-
Glu
TTC
[ENA]
¡û
>SRA1019409
SRR035082.451779
454 Sequencing (SRP001803)
122
196
+
Glu
CTC
[SRA]
>SRA1029584
SRR035087.149018
454 Sequencing (SRP001808)
216
290
+
Glu
TTC
[SRA]
>W2010431643
FZQB01000008
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
48214
48140
-
Glu
TTC
[ENA]
¡û
>W2010451957
JAAEAJ010000011
Alphaproteobacteria
Rhodovulum sulfidophilum SE1 [JAAEAJ]
137375
137449
+
Glu
TTC
[ENA]
¡û
>W2011168891
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
805219
805145
-
Glu
TTC
[ENA]
¡û
>W2011206435
PNOS01000031
Alphaproteobacteria
Rhodobacteraceae bacterium XY-R6 [PNOS]
4539
4613
+
Glu
TTC
[ENA]
¡û
>SRA1043466
SRR035092.120397
454 Sequencing (SRP001813)
315
241
-
Glu
TTC
[SRA]
>W2011315751
QWDA01000002
Alphaproteobacteria
Rhodobacteraceae bacterium IMCC 34051 [QWDA]
469097
469171
+
Glu
TTC
[ENA]
¡û
>W2011319158
QWJJ01000006
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
154750
154824
+
Glu
TTC
[ENA]
¡û
>W2011641021
SMUV01000045
Alphaproteobacteria
Ruegeria sp. 318-1 [SMUV]
14926
14852
-
Glu
TTC
[ENA]
¡û
>W2011701800
SWBV01000002
Alphaproteobacteria
Puniceibacterium sp. HSS470 [SWBV]
336558
336632
+
Glu
TTC
[ENA]
¡û
>W2012357838
WKKA01000003
Alphaproteobacteria
Paracoccus sp. S-4012 [WKKA]
303249
303323
+
Glu
TTC
[ENA]
¡û
>W2012445201
WUMU01000017
Alphaproteobacteria
Pseudooceanicola sp. GBMRC 2024 [WUMU]
119222
119148
-
Glu
TTC
[ENA]
¡û
>W2012445202
WUMU01000017
Alphaproteobacteria
Pseudooceanicola sp. GBMRC 2024 [WUMU]
119121
119047
-
Glu
TTC
[ENA]
¡û
>W2012445203
WUMU01000017
Alphaproteobacteria
Pseudooceanicola sp. GBMRC 2024 [WUMU]
119020
118946
-
Glu
TTC
[ENA]
¡û
>W2110051226
BNAB01000006
Alphaproteobacteria
Acidimangrovimonas indica CGMCC 1.10859 [BNAB]
52223
52149
-
Glu
TTC
[ENA]
¡û
>W2110447829
JAESJD010000006
Alphaproteobacteria
Rhodovulum sulfidophilum AB14 [JAESJD]
82636
82710
+
Glu
TTC
[ENA]
¡û
>W2110447913
JAESJE010000346
Alphaproteobacteria
Rhodovulum sulfidophilum AB16 [JAESJE]
2233
2159
-
Glu
TTC
[ENA]
¡û
>W2110447925
JAESJF010000080
Alphaproteobacteria
Rhodovulum sulfidophilum AB20 [JAESJF]
3769
3843
+
Glu
TTC
[ENA]
¡û
>W2110447995
JAESJG010000251
Alphaproteobacteria
Rhodovulum sulfidophilum AB22 [JAESJG]
3951
4025
+
Glu
TTC
[ENA]
¡û
>W2110448006
JAESJH010000005
Alphaproteobacteria
Rhodovulum sulfidophilum AB23 [JAESJH]
5337
5263
-
Glu
TTC
[ENA]
¡û
>W2110448055
JAESJI010000010
Alphaproteobacteria
Rhodovulum sulfidophilum AB33 [JAESJI]
98357
98431
+
Glu
TTC
[ENA]
¡û
>W2110448122
JAESJJ010000021
Alphaproteobacteria
Rhodovulum sulfidophilum AB35 [JAESJJ]
82883
82957
+
Glu
TTC
[ENA]
¡û
>W2110508259
JAFKOK010000003
Alphaproteobacteria
Rhodobacter sp. NTK016B [JAFKOK]
169325
169251
-
Glu
TTC
[ENA]
¡û
>W2110606499
JAHIAB010000002
Alphaproteobacteria
Pseudooceanicola endophyticus CBS1P-1 [JAHIAB]
119974
119900
-
Glu
TTC
[ENA]
¡û
>W2110606500
JAHIAB010000002
Alphaproteobacteria
Pseudooceanicola endophyticus CBS1P-1 [JAHIAB]
119875
119801
-
Glu
TTC
[ENA]
¡û
>W2110606501
JAHIAB010000002
Alphaproteobacteria
Pseudooceanicola endophyticus CBS1P-1 [JAHIAB]
119774
119700
-
Glu
TTC
[ENA]
¡û
>W2110639229
JAHQZS010000003
Alphaproteobacteria
Rhodobacteraceae bacterium ASV31 [JAHQZS]
298403
298329
-
Glu
TTC
[ENA]
¡û
>W2110706879
JAIWIS010000001
Alphaproteobacteria
Cereibacter sphaeroides AmN35-2 [JAIWIS]
1294335
1294409
+
Glu
TTC
[ENA]
¡û
>W2110706880
JAIWIS010000001
Alphaproteobacteria
Cereibacter sphaeroides AmN35-2 [JAIWIS]
1294601
1294675
+
Glu
TTC
[ENA]
¡û
>C231112511
CP067129
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [CP067129]
1932491
1932565
+
Glu
TTC
-
¡û
>W2110751710
NHRZ01000056
Alphaproteobacteria
Rhodovulum sulfidophilum IM796 [NHRZ]
59980
60054
+
Glu
TTC
[ENA]
¡û
>C161001485
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
448188
448114
-
Glu
TTC
[Ensembl]
¡û
>C161087705
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
173186
173260
+
Glu
TTC
-
¡û
>C161087754
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
167423
167497
+
Glu
TTC
[Ensembl]
¡û
>W1610891916
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
109956
110030
+
Glu
TTC
[ENA]
¡û
>W1610891917
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
110222
110296
+
Glu
TTC
[ENA]
¡û
>W1710529547
FNOB01000007
Alphaproteobacteria
Allgaiera indica [FNOB]
52213
52139
-
Glu
TTC
[ENA]
¡û
>W1710540946
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
853602
853528
-
Glu
TTC
[ENA]
¡û
>W1710592379
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
14487
14561
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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