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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375946 (30 seq.)
>W1710778590
LJDB01000043
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
150432
150361
-
Glu
TTC
[ENA]
¡û
>W1710778601
LJDB01000044
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
44845
44774
-
Glu
TTC
[ENA]
¡û
>W1710784730
LJHC01000101
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
30885
30814
-
Glu
TTC
[ENA]
¡û
>W1710784743
LJHC01000134
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
73
2
-
Glu
TTC
[ENA]
¡û
>W1711137068
LVAX01000075
Bacillota
Clostridiales bacterium Firm_18 [LVAX]
15855
15929
+
Glu
TTC
[ENA]
¡û
>W131204215
ATAY01000028
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
12733
12659
-
Glu
TTC
[ENA]
¡û
>w020753
AAVC01000057
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
15003
14927
-
Glu
TTC
[ENA]
¡û
>WENV181231610
OFEK01041889
[OFEK] activated sludge metagenome; Anaerobic digester
964
890
-
Glu
TTC
[ENA]
¡û
>W141279268
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1371233
1371159
-
Glu
TTC
[ENA]
¡û
>WENV170004595
AGTN01733793
[AGTN] bioreactor metagenome; poplar biomass
338
412
+
Glu
TTC
[ENA]
¡û
>WENV170561384
CZCA01007651
[CZCA] anaerobic digester metagenome; anaerobic digester
1655
1729
+
Glu
TTC
[ENA]
¡û
>WENV170784845
MDSO01000754
[MDSO] gut metagenome; Stomach gut content
203
277
+
Glu
TTC
[ENA]
¡û
>WENV170784992
MDSO01148264
[MDSO] gut metagenome; Stomach gut content
502
431
-
Glu
TTC
[ENA]
¡û
>WENV170785006
MDSO01164850
[MDSO] gut metagenome; Stomach gut content
118
189
+
Glu
TTC
[ENA]
¡û
>WENV170785061
MDSP01000029
[MDSP] gut metagenome; Stomach gut content
284
355
+
Glu
TTC
[ENA]
¡û
>WENV170785279
MDSP01006518
[MDSP] gut metagenome; Stomach gut content
2300
2371
+
Glu
TTC
[ENA]
¡û
>C09103084
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3540689
3540615
-
Glu
TTC
[Ensembl]
¡û
>W1810677436
QKMR01000018
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
77065
77139
+
Glu
TTC
[ENA]
¡û
>W2011480053
RQSR01000009
Bacillota
Ruminiclostridium sp. MA18 [RQSR]
40039
39965
-
Glu
TTC
[ENA]
¡û
>W10105875
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
95719
95645
-
Glu
TTC
[ENA]
¡û
>C211116885
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
1955553
1955627
+
Glu
TTC
-
¡û
>C211116903
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
3346257
3346331
+
Glu
TTC
-
¡û
>C211116916
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
1795124
1795050
-
Glu
TTC
-
¡û
>C211145706
CP061336
Bacillota
Ruminiclostridium herbifermentans MA18 [CP061336]
1121108
1121182
+
Glu
TTC
-
¡û
>C231624794
CP119677
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [CP119677]
4520165
4520091
-
Glu
TTC
-
¡û
>W11108219
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
42203
42277
+
Glu
TTC
[ENA]
¡û
>C121009851
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4213668
4213594
-
Glu
TTC
[Ensembl]
¡û
>W1610043775
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15772
15846
+
Glu
TTC
[ENA]
¡û
>W1610948188
LVAX01000075
Bacillota
Clostridiales bacterium Firm_18 [LVAX]
15855
15929
+
Glu
TTC
[ENA]
¡û
>W1710040935
BBAA01000054
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
15772
15846
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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