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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376060 (35 seq.)
>W1710785212
LJHR01000005
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
112796
112870
+
Thr
CGT
[ENA]
¡û
>W131223725
AUCG01000021
Alphaproteobacteria
Niveispirillum irakense DSM 11586 [AUCG]
212896
212822
-
Thr
CGT
[ENA]
¡û
>W1711589341
MOEB01000014
Alphaproteobacteria
Aerophototrophica crusticola MIMtkB3 [MOEB]
29504
29430
-
Thr
CGT
[ENA]
¡û
>WENV180315412
OBKH01085888
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
317
391
+
Thr
CGT
[ENA]
¡û
>WENV181145562
OEHO01346909
[OEHO] metagenome; unknown
72
146
+
Thr
CGT
[ENA]
¡û
>WENV181186015
OEMK01001770
[OEMK] metagenome; 1998
7575
7501
-
Thr
CGT
[ENA]
¡û
>WENV181192850
OEPS011116583
[OEPS] soil metagenome; soil
63
137
+
Thr
CGT
[ENA]
¡û
>WENV181294073
OFHG01070409
[OFHG] soil metagenome; Clay
686
612
-
Thr
CGT
[ENA]
¡û
>WENV183725107
PJQE01156151
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
279
205
-
Thr
CGT
[ENA]
¡û
>WENV170558526
CXWL01076051
[CXWL] groundwater metagenome; biofilm material
244
170
-
Thr
CGT
[ENA]
¡û
>WENV170660483
JXWT01115554
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
95
21
-
Thr
CGT
[ENA]
¡û
>WENV170709548
LNFM01000450
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
193629
193703
+
Thr
CGT
[ENA]
¡û
>C181058307
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
258984
258910
-
Thr
CGT
-
¡û
>C181120705
CP025612
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
397958
398032
+
Thr
CGT
-
¡û
>C191071846
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
2453689
2453763
+
Thr
CGT
-
¡û
>W1910548160
FZOI01000002
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
277120
277046
-
Thr
CGT
[ENA]
¡û
>W1910548542
FZOP01000002
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
277120
277046
-
Thr
CGT
[ENA]
¡û
>C09108663
CP000613
Alphaproteobacteria
Rhodospirillum centenum SW SW; ATCC 51521 [CP000613]
2511296
2511370
+
Thr
CGT
[Ensembl]
¡û
>W1911139320
NOXU01000029
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
89711
89785
+
Thr
CGT
[ENA]
¡û
>W1911702302
QOCQ01000008
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
143889
143815
-
Thr
CGT
[ENA]
¡û
>W1810605715
QGNJ01000031
Alphaproteobacteria
Oleisolibacter albus NAU-10 [QGNJ]
1348
1274
-
Thr
CGT
[ENA]
¡û
>W2010429921
FZOI01000002
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
277120
277046
-
Thr
CGT
[ENA]
¡û
>W2010430303
FZOP01000002
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
277120
277046
-
Thr
CGT
[ENA]
¡û
>W2010728026
JACIGH010000007
Alphaproteobacteria
Rhodospirillum centenum DSM 8284 [JACIGH]
188004
187930
-
Thr
CGT
[ENA]
¡û
>W2010731361
JACIIZ010000008
Alphaproteobacteria
Nitrospirillum iridis DSM 22198 [JACIIZ]
113116
113190
+
Thr
CGT
[ENA]
¡û
>W2011014820
NOXU01000029
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
89711
89785
+
Thr
CGT
[ENA]
¡û
>W2011278917
QOCQ01000008
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
143889
143815
-
Thr
CGT
[ENA]
¡û
>W2011993154
VDUZ01000016
Alphaproteobacteria
Enhydrobacter sp. CC-CFT640 [VDUZ]
63984
63910
-
Thr
CGT
[ENA]
¡û
>W2012044150
VITN01000003
Alphaproteobacteria
Nitrospirillum amazonense BR 11880 [VITN]
361072
360998
-
Thr
CGT
[ENA]
¡û
>W2012044493
VITT01000022
Alphaproteobacteria
Nitrospirillum amazonense BR 11140 [VITT]
87085
87159
+
Thr
CGT
[ENA]
¡û
>W2012102786
VOHA01000001
Alphaproteobacteria
Reyranella sp. CPCC 100927 [VOHA]
197745
197671
-
Thr
CGT
[ENA]
¡û
>W2012332844
WIDQ01000005
Alphaproteobacteria
Niveispirillum sp. SYP-B3756 [WIDQ]
247323
247397
+
Thr
CGT
[ENA]
¡û
>W2110024024
BMGN01000006
Alphaproteobacteria
Niveispirillum cyanobacteriorum CGMCC 1.12958 [BMGN]
300235
300309
+
Thr
CGT
[ENA]
¡û
>C211197471
CP064988
Alphaproteobacteria
Rhodospirillales bacterium [CP064988]
3013148
3013074
-
Thr
CGT
-
¡û
>W1610649018
LJHR01000005
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
112796
112870
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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