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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376141 (86 seq.)
>W1710799921
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
251217
251291
+
Gln
TTG
[ENA]
¡û
>W1710799922
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
251346
251420
+
Gln
TTG
[ENA]
¡û
>W1710803983
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
508860
508934
+
Gln
TTG
[ENA]
¡û
>W1710803984
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
508987
509061
+
Gln
TTG
[ENA]
¡û
>W131177270
ARKQ01000048
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
205963
205889
-
Gln
TTG
[ENA]
¡û
>W131177271
ARKQ01000048
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
205815
205741
-
Gln
TTG
[ENA]
¡û
>C006813
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3700029
3700103
+
Gln
TTG
[Ensembl]
¡û
>C006814
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3700167
3700241
+
Gln
TTG
[Ensembl]
¡û
>WENV180650587
OCSY01085577
[OCSY] marine metagenome; 30 L Plastic container
209
135
-
Gln
TTG
[ENA]
¡û
>WENV182543029
OJAZ01017942
[OJAZ] seawater metagenome; Sea water
119
193
+
Gln
TTG
[ENA]
¡û
>WENV182543547
OJBB01003434
[OJBB] seawater metagenome; Sea water
1943
2017
+
Gln
TTG
[ENA]
¡û
>WENV182543548
OJBB01003434
[OJBB] seawater metagenome; Sea water
2081
2155
+
Gln
TTG
[ENA]
¡û
>WENV182576950
OJGB01002059
[OJGB] seawater metagenome; Sea water
440
514
+
Gln
TTG
[ENA]
¡û
>WENV182578596
OJGO01002525
[OJGO] seawater metagenome; Sea water
2128
2202
+
Gln
TTG
[ENA]
¡û
>WENV182578597
OJGO01002525
[OJGO] seawater metagenome; Sea water
2266
2340
+
Gln
TTG
[ENA]
¡û
>WENV182588329
OJHR01003200
[OJHR] seawater metagenome; Sea water
651
725
+
Gln
TTG
[ENA]
¡û
>WENV182592707
OJIR01011701
[OJIR] seawater metagenome; Sea water
1231
1305
+
Gln
TTG
[ENA]
¡û
>WENV182592708
OJIR01011701
[OJIR] seawater metagenome; Sea water
1370
1444
+
Gln
TTG
[ENA]
¡û
>WENV183057723
OLHM01001379
[OLHM] seawater metagenome; Sea water
4514
4588
+
Gln
TTG
[ENA]
¡û
>WENV183057724
OLHM01001379
[OLHM] seawater metagenome; Sea water
4652
4726
+
Gln
TTG
[ENA]
¡û
>WENV170537345
CEWR01000824
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
635
561
-
Gln
TTG
[ENA]
¡û
>WENV170573011
FLOH01003609
[FLOH] marine metagenome; water
516
442
-
Gln
TTG
[ENA]
¡û
>WENV170573012
FLOH01003609
[FLOH] marine metagenome; water
388
314
-
Gln
TTG
[ENA]
¡û
>WENV170704359
LLEJ01004755
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
212
138
-
Gln
TTG
[ENA]
¡û
>WENV170704360
LLEJ01004755
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
74
1
-
Gln
TTG
[ENA]
¡û
>WENV170704756
LLEM01006036
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
68
142
+
Gln
TTG
[ENA]
¡û
>WENV170704855
LLEN01004193
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
518
590
+
Gln
TTG
[ENA]
¡û
>WENV170780723
MAAB01017501
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1148
1074
-
Gln
TTG
[ENA]
¡û
>WENV170780724
MAAB01017501
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1018
944
-
Gln
TTG
[ENA]
¡û
>WENV170780969
MAAB01028900
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
168785
168859
+
Gln
TTG
[ENA]
¡û
>WENV170780970
MAAB01028900
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
168933
169007
+
Gln
TTG
[ENA]
¡û
>WENV170781046
MAAB01029200
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
847
773
-
Gln
TTG
[ENA]
¡û
>WENV170781047
MAAB01029200
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
716
642
-
Gln
TTG
[ENA]
¡û
>WENV170781059
MAAB01029226
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
37082
37156
+
Gln
TTG
[ENA]
¡û
>WENV170781060
MAAB01029226
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
37295
37369
+
Gln
TTG
[ENA]
¡û
>WENV170781139
MAAB01029465
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4205
4279
+
Gln
TTG
[ENA]
¡û
>WENV170781140
MAAB01029465
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4348
4422
+
Gln
TTG
[ENA]
¡û
>WENV170781143
MAAB01029465
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4866
4940
+
Gln
TTG
[ENA]
¡û
>WENV170781147
MAAB01029563
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
149598
149672
+
Gln
TTG
[ENA]
¡û
>WENV170781148
MAAB01029563
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
149727
149801
+
Gln
TTG
[ENA]
¡û
>WENV170782116
MAAC01008843
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1638
1712
+
Gln
TTG
[ENA]
¡û
>WENV170782117
MAAC01008843
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1786
1860
+
Gln
TTG
[ENA]
¡û
>WENV170782526
MAAC01010179
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
161165
161239
+
Gln
TTG
[ENA]
¡û
>WENV170782527
MAAC01010179
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
161294
161368
+
Gln
TTG
[ENA]
¡û
>WENV170782913
MAAC01012067
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4254
4180
-
Gln
TTG
[ENA]
¡û
>WENV170782914
MAAC01012067
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4115
4041
-
Gln
TTG
[ENA]
¡û
>WENV170782943
MAAC01012120
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16817
16891
+
Gln
TTG
[ENA]
¡û
>WENV170782944
MAAC01012120
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16946
17020
+
Gln
TTG
[ENA]
¡û
>WENV170783259
MAAC01015395
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
426
500
+
Gln
TTG
[ENA]
¡û
>WENV170783260
MAAC01015395
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
557
631
+
Gln
TTG
[ENA]
¡û
>WENV170825255
MDSY01089736
[MDSY] marine metagenome; seawater
2245
2319
+
Gln
TTG
[ENA]
¡û
>WENV170825256
MDSY01089736
[MDSY] marine metagenome; seawater
2362
2436
+
Gln
TTG
[ENA]
¡û
>W1810155125
PJAI01000122
Gammaproteobacteria
Colwellia echini A3T [PJAI]
156816
156890
+
Gln
TTG
[ENA]
¡û
>W1810155126
PJAI01000122
Gammaproteobacteria
Colwellia echini A3T [PJAI]
156953
157027
+
Gln
TTG
[ENA]
¡û
>W1810155137
PJAI01000123
Gammaproteobacteria
Colwellia echini A3T [PJAI]
209574
209500
-
Gln
TTG
[ENA]
¡û
>W1810155347
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
299284
299358
+
Gln
TTG
[ENA]
¡û
>W1810155348
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
299414
299488
+
Gln
TTG
[ENA]
¡û
>W1810155540
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
257507
257581
+
Gln
TTG
[ENA]
¡û
>W1810155541
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
257637
257711
+
Gln
TTG
[ENA]
¡û
>W1810155544
PJAU01000032
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
258305
258379
+
Gln
TTG
[ENA]
¡û
>W1810156028
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
378794
378720
-
Gln
TTG
[ENA]
¡û
>W1810156029
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
378656
378582
-
Gln
TTG
[ENA]
¡û
>W1810735857
QOLD01000003
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
99283
99357
+
Gln
TTG
[ENA]
¡û
>W1810735858
QOLD01000003
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
99412
99486
+
Gln
TTG
[ENA]
¡û
>W2011753436
SZVP01000016
Gammaproteobacteria
Colwellia sp. OISW-25 [SZVP]
73158
73232
+
Gln
TTG
[ENA]
¡û
>W2011753437
SZVP01000016
Gammaproteobacteria
Colwellia sp. OISW-25 [SZVP]
73287
73361
+
Gln
TTG
[ENA]
¡û
>W2011970841
VCBC01000007
Gammaproteobacteria
Thalassotalea litorea MCCC 1K03283 [VCBC]
90235
90161
-
Gln
TTG
[ENA]
¡û
>W2012105545
VOLT01000005
Gammaproteobacteria
Colwellia demingiae ACAM 459 [VOLT]
393050
393124
+
Gln
TTG
[ENA]
¡û
>W2012105546
VOLT01000005
Gammaproteobacteria
Colwellia demingiae ACAM 459 [VOLT]
393181
393255
+
Gln
TTG
[ENA]
¡û
>W2110612260
JAHKQD010000054
Gammaproteobacteria
Colwellia sp. C2M11 [JAHKQD]
18518
18592
+
Gln
TTG
[ENA]
¡û
>W2110612261
JAHKQD010000054
Gammaproteobacteria
Colwellia sp. C2M11 [JAHKQD]
18723
18797
+
Gln
TTG
[ENA]
¡û
>C241116635
CP047130
Gammaproteobacteria
Colwellia sp. 20A7 [CP047130]
1814638
1814564
-
Gln
TTG
-
¡û
>C241116636
CP047130
Gammaproteobacteria
Colwellia sp. 20A7 [CP047130]
1814431
1814357
-
Gln
TTG
-
¡û
>W1511322859
JQEC01000011
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
115908
115982
+
Gln
TTG
[ENA]
¡û
>W1511322860
JQEC01000011
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
116056
116130
+
Gln
TTG
[ENA]
¡û
>W1511322954
JQED01000015
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
100751
100825
+
Gln
TTG
[ENA]
¡û
>W1511322955
JQED01000015
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
100890
100964
+
Gln
TTG
[ENA]
¡û
>C161052251
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2830665
2830739
+
Gln
TTG
[Ensembl]
¡û
>C161052252
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2830793
2830867
+
Gln
TTG
[Ensembl]
¡û
>W1610663878
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
251217
251291
+
Gln
TTG
[ENA]
¡û
>W1610663879
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
251346
251420
+
Gln
TTG
[ENA]
¡û
>W1610667840
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
508860
508934
+
Gln
TTG
[ENA]
¡û
>W1610667841
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
508987
509061
+
Gln
TTG
[ENA]
¡û
>W1730003014
BDQM01000587
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
206
132
-
Gln
TTG
[ENA]
¡û
>W1710087344
BDQM01000010
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
124614
124688
+
Gln
TTG
[ENA]
¡û
>W1710087394
BDQM01000587
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
77
3
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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