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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376145 (70 seq.)
>W1710809744
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
1283
1357
+
Gly
CCC
[ENA]
¡û
>W1710923815
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1710927100
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43388
43462
+
Gly
CCC
[ENA]
¡û
>W1711434395
MIMZ01000004
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
159705
159779
+
Gly
CCC
[ENA]
¡û
>C171101781
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2239474
2239548
+
Gly
CCC
-
¡û
>W131162723
AQZD01000011
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
10641
10567
-
Gly
CCC
[ENA]
¡û
>W131164682
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
10621
10547
-
Gly
CCC
[ENA]
¡û
>C007802
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1727991
1728065
+
Gly
CCC
[Ensembl]
¡û
>WENV180176882
OAWD01002749
[OAWD] human gut metagenome; faeces
2865
2939
+
Gly
CCC
[ENA]
¡û
>w002209
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
64081
64010
-
Gly
CCC
[ENA]
¡û
>WENV180498781
OCAG01001856
[OCAG] human gut metagenome; faeces
1127
1201
+
Gly
CCC
[ENA]
¡û
>WENV180504504
OCAN01004417
[OCAN] human gut metagenome; faeces
1012
1086
+
Gly
CCC
[ENA]
¡û
>W141088319
AUUR01000179
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
72297
72223
-
Gly
CCC
[ENA]
¡û
>WENV181346450
OFML01019269
[OFML] human gut metagenome; human gut
595
669
+
Gly
CCC
[ENA]
¡û
>W141150094
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
54711
54637
-
Gly
CCC
[ENA]
¡û
>WENV182403366
OIET01003389
[OIET] human gut metagenome; human gut
1054
1128
+
Gly
CCC
[ENA]
¡û
>WENV183665321
ORJL010457255
[ORJL] groundwater metagenome; groundwater
11049
11123
+
Gly
CCC
[ENA]
¡û
>WENV170692236
LGOV01001494
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
4524
4450
-
Gly
CCC
[ENA]
¡û
>WENV170695978
LGVE01193373
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
242
168
-
Gly
CCC
[ENA]
¡û
>WENV170699863
LGVF01677018
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
9211
9137
-
Gly
CCC
[ENA]
¡û
>C191064400
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
8235
8309
+
Gly
CCC
-
¡û
>C191219539
LR215983
Bacillota
Eubacterium limosum [LR215983]
2478612
2478538
-
Gly
CCC
-
¡û
>C09104013
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2805820
2805894
+
Gly
CCC
[Ensembl]
¡û
>W1810609746
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
2698
2624
-
Gly
CCC
[ENA]
¡û
>W1810871721
QUDF01000004
Bacillota
Eubacterium sp. AM05-23 [QUDF]
57517
57591
+
Gly
CCC
[ENA]
¡û
>C151016356
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2170758
2170684
-
Gly
CCC
[Ensembl]
¡û
>W2010253738
CABJAI020000002
Bacillota
Eubacterium callanderi [CABJAI]
476467
476541
+
Gly
CCC
[ENA]
¡û
>W2010258723
CABJDW020000004
Bacillota
Eubacterium limosum [CABJDW]
57517
57591
+
Gly
CCC
[ENA]
¡û
>W2010677182
JACCKS010000049
Bacillota
Eubacterium callanderi AMC0717 [JACCKS]
1289
1363
+
Gly
CCC
[ENA]
¡û
>W2011502510
RXYA01000020
Bacillota
Acetobacterium paludosum DSM 8237 [RXYA]
18159
18085
-
Gly
CCC
[ENA]
¡û
>W2011502555
RXYB01000033
Bacillota
Acetobacterium tundrae DSM 917 [RXYB]
18224
18150
-
Gly
CCC
[ENA]
¡û
>W2011502587
RXYC01000006
Bacillota
Acetobacterium bakii DSM 8239 [RXYC]
276931
276857
-
Gly
CCC
[ENA]
¡û
>W2011847160
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
2725594
2725668
+
Gly
CCC
[ENA]
¡û
>W2011861249
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
2725594
2725668
+
Gly
CCC
[ENA]
¡û
>W2012081115
VLKD01000001
Bacillota
Desulfitobacterium sp. LBE [VLKD]
775543
775469
-
Gly
CCC
[ENA]
¡û
>W2012131269
VSLA01000011
Bacillota
Acetobacterium wieringae JM [VSLA]
35780
35706
-
Gly
CCC
[ENA]
¡û
>W2012154811
VUMP01000002
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
608814
608888
+
Gly
CCC
[ENA]
¡û
>W2110074899
CABIIK010000034
Bacillota
Acetobacterium wieringae [CABIIK]
213
287
+
Gly
CCC
[ENA]
¡û
>W2110076057
CACRTR010000004
Bacillota
Eubacterium limosum [CACRTR]
12430
12356
-
Gly
CCC
[ENA]
¡û
>W2110176668
JABFAG010000008
Bacillota
Eubacterium callanderi GGCC_0197 [JABFAG]
120037
120111
+
Gly
CCC
[ENA]
¡û
>W2110343368
JADMVE010000001
Bacillota
Eubacterium sp. 1001713B170207_170306_E7 [JADMVE]
175236
175310
+
Gly
CCC
[ENA]
¡û
>W2110356684
JADNNR010000019
Bacillota
Eubacterium maltosivorans BSD2780120874b_170522_C8 [JADNNR]
12140
12214
+
Gly
CCC
[ENA]
¡û
>W2110619610
JAHLOB010000014
Bacillota
Eubacterium callanderi N72 [JAHLOB]
7126
7052
-
Gly
CCC
[ENA]
¡û
>W2110626816
JAHMUG010000015
Bacillota
Eubacterium callanderi KGMB02377 [JAHMUG]
2603
2529
-
Gly
CCC
[ENA]
¡û
>W2110725908
JAJCHU010000001
Bacillota
Eubacterium callanderi DFI.4.61 [JAJCHU]
700544
700470
-
Gly
CCC
[ENA]
¡û
>W2110728112
JAJCKW010000001
Bacillota
Eubacterium callanderi DFI.4.63B [JAJCKW]
700594
700520
-
Gly
CCC
[ENA]
¡û
>W2110728993
JAJCLO010000035
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
984
1058
+
Gly
CCC
[ENA]
¡û
>W2110729861
JAJCMN010000001
Bacillota
Eubacterium callanderi DFI.4.62 [JAJCMN]
159195
159269
+
Gly
CCC
[ENA]
¡û
>C231248034
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
697915
697989
+
Gly
CCC
-
¡û
>C231384454
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
1434208
1434134
-
Gly
CCC
-
¡û
>C231395001
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
647927
648001
+
Gly
CCC
-
¡û
>W2110783188
WJBB01000031
Bacillota
Acetobacterium tundrae DER-2019 [WJBB]
18224
18150
-
Gly
CCC
[ENA]
¡û
>W2110783233
WJBC01000036
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
15029
14955
-
Gly
CCC
[ENA]
¡û
>W2110783287
WJBD01000030
Bacillota
Acetobacterium paludosum DER-2019 [WJBD]
18159
18085
-
Gly
CCC
[ENA]
¡û
>W2110783329
WJBE01000024
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
33637
33711
+
Gly
CCC
[ENA]
¡û
>W2310010274
BMAX01000002
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
272804
272730
-
Gly
CCC
[ENA]
¡û
>C11120635
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3366996
3366922
-
Gly
CCC
[Ensembl]
¡û
>W1511480169
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
14694
14620
-
Gly
CCC
[ENA]
¡û
>W11181423
AGJB01000028
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1158
1232
+
Gly
CCC
[ENA]
¡û
>C121003914
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3338634
3338560
-
Gly
CCC
[Ensembl]
¡û
>C161037829
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2770967
2770893
-
Gly
CCC
[Ensembl]
¡û
>W121007275
AFZX01000060
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
10400
10326
-
Gly
CCC
[ENA]
¡û
>C131008521
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
3043854
3043780
-
Gly
CCC
[Ensembl]
¡û
>C131008572
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
3065949
3065875
-
Gly
CCC
[Ensembl]
¡û
>W1610781416
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1610784642
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43388
43462
+
Gly
CCC
[ENA]
¡û
>W1710525047
FNJF01000027
Bacillota
Eubacterium maltosivorans limosum [FNJF]
1079
1153
+
Gly
CCC
[ENA]
¡û
>W1710571996
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
198062
198136
+
Gly
CCC
[ENA]
¡û
>W1710591278
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
172232
172158
-
Gly
CCC
[ENA]
¡û
>W1710593555
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
76292
76218
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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