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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376206 (42 seq.)
>W1711059953
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
1155283
1155357
+
Gln
TTG
[ENA]
¡û
>W1711352942
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
388888
388962
+
Gln
TTG
[ENA]
¡û
>W1712097646
NIDL01000003
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
38638
38712
+
Gln
TTG
[ENA]
¡û
>C171036262
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2198807
2198881
+
Gln
TTG
-
¡û
>C171098473
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
1951263
1951189
-
Gln
TTG
-
¡û
>W141067185
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
426205
426131
-
Gln
TTG
[ENA]
¡û
>WENV183056617
OLHJ01002270
[OLHJ] seawater metagenome; Sea water
1570
1642
+
Gln
TTG
[ENA]
¡û
>WENV170022592
BCQK01023840
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
416
344
-
Gln
TTG
[ENA]
¡û
>WENV170025031
BCQL01188873
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
247
321
+
Gln
TTG
[ENA]
¡û
>WENV170783290
MAAC01015624
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
37091
37165
+
Gln
TTG
[ENA]
¡û
>WENV170783423
MAAC01016769
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1724
1652
-
Gln
TTG
[ENA]
¡û
>C191127763
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2261783
2261709
-
Gln
TTG
-
¡û
>C191182111
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
3430247
3430175
-
Gln
TTG
-
¡û
>W141562335
JHZC01000001
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
198964
199036
+
Gln
TTG
[ENA]
¡û
>W141563391
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
1734275
1734349
+
Gln
TTG
[ENA]
¡û
>W1910545623
FZLT01000067
Bacteroidota
Cellulophaga lytica [FZLT]
84150
84222
+
Gln
TTG
[ENA]
¡û
>W1910693638
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
122305
122379
+
Gln
TTG
[ENA]
¡û
>W1810121602
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
330848
330774
-
Gln
TTG
[ENA]
¡û
>C151046343
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2030509
2030583
+
Gln
TTG
[Ensembl]
¡û
>W2010427308
FZLT01000067
Bacteroidota
Cellulophaga lytica [FZLT]
84150
84222
+
Gln
TTG
[ENA]
¡û
>W2010567735
JAATJJ010000001
Bacteroidota
Saonia flava DSM 29762 [JAATJJ]
1617060
1616988
-
Gln
TTG
[ENA]
¡û
>W2010577914
JAAWWL010000001
Bacteroidota
Muricauda sp. DJ-13 [JAAWWL]
393050
392978
-
Gln
TTG
[ENA]
¡û
>W2010743051
JACJUK010000005
Bacteroidota
Muricauda lutea CSW06 [JACJUK]
286294
286222
-
Gln
TTG
[ENA]
¡û
>W2010827452
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
122305
122379
+
Gln
TTG
[ENA]
¡û
>W2011373941
RBIQ01000007
Bacteroidota
Maribacter vaceletii DSM 25230 [RBIQ]
220296
220224
-
Gln
TTG
[ENA]
¡û
>W2011460721
RPFJ01000015
Bacteroidota
Flavobacteriaceae bacterium BH-SD17 [RPFJ]
74754
74826
+
Gln
TTG
[ENA]
¡û
>W2011961852
VANR01000004
Bacteroidota
Polaribacter sp. DBTF-3 [VANR]
214943
215015
+
Gln
TTG
[ENA]
¡û
>W2011963034
VATY01000001
Bacteroidota
Maribacter sp. RZ26 [VATY]
552557
552485
-
Gln
TTG
[ENA]
¡û
>W2012041958
VIRZ01000001
Bacteroidota
Cellulophaga sp. RHA_52 [VIRZ]
289834
289762
-
Gln
TTG
[ENA]
¡û
>W2012352420
WJPK01000006
Bacteroidota
Kriegella sp. EG-1 [WJPK]
103052
102980
-
Gln
TTG
[ENA]
¡û
>W2110028180
BMJU01000004
Bacteroidota
Muricauda lutea CGMCC 1.15761 [BMJU]
412508
412436
-
Gln
TTG
[ENA]
¡û
>W2110028240
BMJW01000001
Bacteroidota
Polaribacter pacificus CGMCC 1.15763 [BMJW]
1194401
1194473
+
Gln
TTG
[ENA]
¡û
>W2110462939
JAFBGM010000001
Bacteroidota
Aurantibacter crassamenti HG732 [JAFBGM]
1832856
1832928
+
Gln
TTG
[ENA]
¡û
>C211118264
CP058988
Bacteroidota
Cellulophaga sp. HaHa_2_95 [CP058988]
4414225
4414153
-
Gln
TTG
-
¡û
>C231569556
CP115819
Bacteroidota
Cellulophaga omnivescoria MSK1 [CP115819]
2063992
2064066
+
Gln
TTG
-
¡û
>C241174060
CP058595
Bacteroidota
Costertonia aggregata KCCM 42265 [CP058595]
929834
929762
-
Gln
TTG
-
¡û
>C241199176
CP107031
Bacteroidota
Maribacter aestuarii JCM18631 [CP107031]
2429700
2429772
+
Gln
TTG
-
¡û
>C241355111
CP140159
Bacteroidota
Cellulophaga lytica DSMZ 7489 [CP140159]
2429301
2429229
-
Gln
TTG
-
¡û
>C11105674
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2072118
2072192
+
Gln
TTG
[Ensembl]
¡û
>W1610900930
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
1155283
1155357
+
Gln
TTG
[ENA]
¡û
>WENV078406
AAGA01008224
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
814
738
-
Gln
TTG
[ENA]
>W1710579959
FPIY01000002
Bacteroidota
Cellulophaga fucicola [FPIY]
648389
648315
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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