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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376218 (37 seq.)
>C171092615
CP019389
Bacteroidota
Seonamhaeicola sp. S2-3 [CP019389]
1649845
1649917
+
Arg
CCT
-
¡û
>WENV180038647
LLBY010001035
[LLBY] soil metagenome; soil from tomato rhizosphere
4507
4579
+
Arg
CCT
[ENA]
¡û
>WENV180040943
LLBZ010026576
[LLBZ] soil metagenome; soil from tomato rhizosphere
17625
17553
-
Arg
CCT
[ENA]
¡û
>WENV170006041
AMQJ01017284
[AMQJ] sediment metagenome; subsurface aquifer sediment
202
130
-
Arg
CCT
[ENA]
¡û
>WENV170014038
AVFP01003100
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
1285
1359
+
Arg
CCT
[ENA]
¡û
>WENV170606087
FUWD010605965
[FUWD] metagenome; unknown
88
162
+
Arg
CCT
[ENA]
¡û
>WENV170705776
LNAP01000260
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
724
798
+
Arg
CCT
[ENA]
¡û
>C191023111
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
1527124
1527052
-
Arg
CCT
-
¡û
>W1910728221
MGWK01000059
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
14310
14382
+
Arg
CCT
[ENA]
¡û
>W1910923760
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
654494
654566
+
Arg
CCT
[ENA]
¡û
>W1910935637
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
698388
698316
-
Arg
CCT
[ENA]
¡û
>W1810161370
PJEO01000017
Bacteroidota
Confluentibacter flavum 3B [PJEO]
1834
1906
+
Arg
CCT
[ENA]
¡û
>W1810679238
QKPO01000005
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
234264
234336
+
Arg
CCT
[ENA]
¡û
>W1810861104
QTTQ01000009
Bacteroidota
Lutibacter oceani 325-5 [QTTQ]
606478
606406
-
Arg
CCT
[ENA]
¡û
>W1810887367
QUOZ01000002
Bacteroidota
Lutibacter oceani JCM30924 [QUOZ]
215010
215082
+
Arg
CCT
[ENA]
¡û
>W2010492855
JAAKGI010000001
Bacteroidota
Yeosuana sp. JLT21 [JAAKGI]
392520
392592
+
Arg
CCT
[ENA]
¡û
>W2010572402
JAAVJS010000001
Bacteroidota
Tamlana crocina HST1-43 [JAAVJS]
222
150
-
Arg
CCT
[ENA]
¡û
>W2010583306
JAAZUI010000007
Bacteroidota
Lutibacter sp. B1 [JAAZUI]
46353
46425
+
Arg
CCT
[ENA]
¡û
>W2010861650
MGWK01000059
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
14310
14382
+
Arg
CCT
[ENA]
¡û
>W2010970281
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
654494
654566
+
Arg
CCT
[ENA]
¡û
>W2010982712
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
698388
698316
-
Arg
CCT
[ENA]
¡û
>W2011411399
RDRZ01000004
Bacteroidota
Flavobacteriaceae bacterium PRS1 [RDRZ]
68729
68801
+
Arg
CCT
[ENA]
¡û
>W2011618937
SLUP01000001
Bacteroidota
Mariniflexile fucanivorans DSM 18792 [SLUP]
626957
627029
+
Arg
CCT
[ENA]
¡û
>W2011643878
SNQI01000003
Bacteroidota
Gramella jeungdoensis KCTC 23123 [SNQI]
10420
10348
-
Arg
CCT
[ENA]
¡û
>W2012426082
WRPN01000002
Bacteroidota
Mariniflexile sp. M5A1M [WRPN]
359590
359518
-
Arg
CCT
[ENA]
¡û
>W2110033321
BMNR01000006
Bacteroidota
Yeosuana aromativorans JCM 12862 [BMNR]
203285
203357
+
Arg
CCT
[ENA]
¡û
>W2110033338
BMNS01000001
Bacteroidota
Lutibacter litoralis JCM 13034 [BMNS]
10051
9979
-
Arg
CCT
[ENA]
¡û
>W2110239878
JACNMF010000001
Bacteroidota
Hyunsoonleella sp. SJ7 [JACNMF]
48326
48254
-
Arg
CCT
[ENA]
¡û
>W2110427036
JAELVQ010000009
Bacteroidota
Snuella sedimenti CAU 1569 [JAELVQ]
119096
119168
+
Arg
CCT
[ENA]
¡û
>W2110438190
JAEPJQ010000001
Bacteroidota
Hyunsoonleella sp. HU1-3 [JAEPJQ]
1021453
1021381
-
Arg
CCT
[ENA]
¡û
>W2110616944
JAHLEH010000001
Bacteroidota
Flavobacteriaceae bacterium XHP0103 [JAHLEH]
373279
373207
-
Arg
CCT
[ENA]
¡û
>W2110691213
JAIOUU010000004
Bacteroidota
Aestuariivivens sp. NBU2969 [JAIOUU]
224597
224525
-
Arg
CCT
[ENA]
¡û
>C231091342
CP062007
Bacteroidota
Flavobacteriaceae bacterium GSB9 [CP062007]
2233572
2233500
-
Arg
CCT
-
¡û
>C231317981
CP092480
Bacteroidota
Lutibacter sp. A80 [CP092480]
3073208
3073280
+
Arg
CCT
-
¡û
>C231318186
CP092487
Bacteroidota
Lutibacter sp. A64 [CP092487]
3317709
3317781
+
Arg
CCT
-
¡û
>C161047096
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
2464937
2464863
-
Arg
CCT
[Ensembl]
¡û
>W1710550745
FOFN01000001
Bacteroidota
Hyunsoonleella jejuensis [FOFN]
362337
362263
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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