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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376272 (54 seq.)
>W131218755
ATXZ01000012
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
139238
139166
-
Gln
TTG
[ENA]
¡û
>W131218764
ATXZ01000013
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
8797
8723
-
Gln
TTG
[ENA]
¡û
>W1711386773
MEFT01000126
Bacillota
Clostridium sp. SCN 57-10 [MEFT]
6714
6640
-
Gln
TTG
[ENA]
¡û
>W131052003
AMYG01000065
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
931
857
-
Gln
TTG
[ENA]
¡û
>W131167551
ARDJ01000009
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
4625
4699
+
Gln
TTG
[ENA]
¡û
>C025866
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
626956
626882
-
Gln
TTG
[Ensembl]
¡û
>w018978
AATV01000029
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
22828
22752
-
Gln
TTG
[ENA]
¡û
>w010180
AAKQ01000005
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
72714
72638
-
Gln
TTG
[ENA]
¡û
>W141092608
AVAF01000122
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
115112
115186
+
Gln
TTG
[ENA]
¡û
>WENV181226121
OFDK01000062
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
48746
48820
+
Gln
TTG
[ENA]
¡û
>W141153121
AXDC01000007
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
3108
3182
+
Gln
TTG
[ENA]
¡û
>C08010939
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
574782
574856
+
Gln
TTG
[Ensembl]
¡û
>C08011070
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1717196
1717125
-
Gln
TTG
[Ensembl]
¡û
>W141276473
JADV01000007
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
60429
60503
+
Gln
TTG
[ENA]
¡û
>WENV170675661
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16861
16787
-
Gln
TTG
[ENA]
¡û
>WENV170676238
LDZR01001829
[LDZR] terrestrial metagenome; oil reservoir sample K2
1675
1749
+
Gln
TTG
[ENA]
¡û
>WENV170676482
LDZS01000031
[LDZS] terrestrial metagenome; oil reservoir sample K3
14288
14214
-
Gln
TTG
[ENA]
¡û
>WENV170683719
LFRM01001295
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1372
1446
+
Gln
TTG
[ENA]
¡û
>WENV170779381
LZQN01004223
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
583
657
+
Gln
TTG
[ENA]
¡û
>C191108105
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1165276
1165350
+
Gln
TTG
-
¡û
>W09112136
ABXP01000101
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
6469
6395
-
Gln
TTG
[ENA]
¡û
>W09133536
ACPF01000036
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
22085
22011
-
Gln
TTG
[ENA]
¡û
>W09134119
ACQZ01000003
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
82946
83020
+
Gln
TTG
[ENA]
¡û
>W09135063
ACVH01000041
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
629
555
-
Gln
TTG
[ENA]
¡û
>W09135163
ACVK01000033
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
11824
11898
+
Gln
TTG
[ENA]
¡û
>W09135869
ACXP01000030
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
22083
22009
-
Gln
TTG
[ENA]
¡û
>C151045293
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
602446
602520
+
Gln
TTG
[Ensembl]
¡û
>W2010593169
JABEQB010000026
Bacillota
Caldanaerobacter subterraneus 1523vc [JABEQB]
34790
34716
-
Gln
TTG
[ENA]
¡û
>W2011622272
SLWU01000006
Bacillota
Caldanaerobacter subterraneus DSM 13054 [SLWU]
112082
112008
-
Gln
TTG
[ENA]
¡û
>W2110471146
JAFCAC010000046
Bacillota
Thermoanaerobacter sp. CM-CNRG TB177 [JAFCAC]
12931
12857
-
Gln
TTG
[ENA]
¡û
>W10105942
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35912
35838
-
Gln
TTG
[ENA]
¡û
>C231126157
CP072107
Bacillota
Oscillospiraceae bacterium CM [CP072107]
1836464
1836393
-
Gln
TTG
-
¡û
>C231539355
CP110888
Bacillota
Thermoanaerobacter sp. RKWS2 [CP110888]
705967
706041
+
Gln
TTG
-
¡û
>W10120504
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
966
892
-
Gln
TTG
[ENA]
¡û
>C10113379
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
650186
650260
+
Gln
TTG
[Ensembl]
¡û
>C10113433
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
692210
692284
+
Gln
TTG
[Ensembl]
¡û
>W11108265
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35912
35838
-
Gln
TTG
[ENA]
¡û
>W1511275120
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
261371
261445
+
Gln
TTG
[ENA]
¡û
>C11122497
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1709409
1709335
-
Gln
TTG
[Ensembl]
¡û
>C11122699
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
614636
614710
+
Gln
TTG
[Ensembl]
¡û
>C11123230
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
737234
737308
+
Gln
TTG
[Ensembl]
¡û
>W11127113
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
966
892
-
Gln
TTG
[ENA]
¡û
>W11152677
AEYS01000018
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1483
1409
-
Gln
TTG
[ENA]
¡û
>W1610043657
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5774
5700
-
Gln
TTG
[ENA]
¡û
>W121068115
AJUD01000012
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
14864
14938
+
Gln
TTG
[ENA]
¡û
>W1610612293
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16861
16787
-
Gln
TTG
[ENA]
¡û
>W1610612640
LGEY01000021
Bacillota
Caldanaerobacter subterraneus [LGEY]
1675
1749
+
Gln
TTG
[ENA]
¡û
>W1710040817
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5774
5700
-
Gln
TTG
[ENA]
¡û
>W1710515321
FNBS01000038
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
9568
9642
+
Gln
TTG
[ENA]
¡û
>W1710560398
FONI01000076
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
1011
937
-
Gln
TTG
[ENA]
¡û
>W1710583281
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
255549
255623
+
Gln
TTG
[ENA]
¡û
>W1710584093
FQVH01000013
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
4062
3988
-
Gln
TTG
[ENA]
¡û
>W1710733799
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16861
16787
-
Gln
TTG
[ENA]
¡û
>W1710733961
LGEY01000021
Bacillota
Caldanaerobacter subterraneus [LGEY]
1675
1749
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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