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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376350 (72 seq.)
>W1711074122
LSJF01000551
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
12031
11957
-
Asn
GTT
[ENA]
¡û
>W1711074381
LSJM01000062
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
23609
23535
-
Asn
GTT
[ENA]
¡û
>W1711075315
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
25534
25608
+
Asn
GTT
[ENA]
¡û
>W1711501459
MKRR01000098
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
147162
147236
+
Asn
GTT
[ENA]
¡û
>W1711506359
MKWI01000016
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
456136
456062
-
Asn
GTT
[ENA]
¡û
>W131160208
AQWK01000002
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
323941
324015
+
Asn
GTT
[ENA]
¡û
>W131160209
AQWK01000002
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
325528
325602
+
Asn
GTT
[ENA]
¡û
>WENV180019686
FTCH01000130
[FTCH] metagenome; soil
6
80
+
Asn
GTT
[ENA]
¡û
>WENV180027079
FTIV01205762
[FTIV] metagenome; soil
174
100
-
Asn
GTT
[ENA]
¡û
>WENV180027840
FTIZ01153248
[FTIZ] metagenome; soil
321
395
+
Asn
GTT
[ENA]
¡û
>WENV180031923
FTJU01001458
[FTJU] metagenome; soil
6323
6397
+
Asn
GTT
[ENA]
¡û
>WENV180298131
OBJA01183525
[OBJA] soil metagenome; sediment, water from around vicinity
381
307
-
Asn
GTT
[ENA]
¡û
>WENV181163901
OEIQ01331578
[OEIQ] soil metagenome; soil
105
31
-
Asn
GTT
[ENA]
¡û
>WENV181164811
OEIR01381412
[OEIR] soil metagenome; soil
110
36
-
Asn
GTT
[ENA]
¡û
>WENV181168587
OEIU01520566
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
47
121
+
Asn
GTT
[ENA]
¡û
>WENV181221884
OFCZ01001335
[OFCZ] metagenome; soil
349
275
-
Asn
GTT
[ENA]
¡û
>WENV181387001
OFRL01030972
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
367
441
+
Asn
GTT
[ENA]
¡û
>WENV181402281
OFTY01000416
[OFTY] sludge metagenome; sludge
28261
28187
-
Asn
GTT
[ENA]
¡û
>WENV183636295
OOKD01000021
[OOKD] human gut metagenome; Skin biopsy
55504
55578
+
Asn
GTT
[ENA]
¡û
>WENV183727941
PJTP01008431
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
274
200
-
Asn
GTT
[ENA]
¡û
>WENV183729579
PJTQ01075658
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
75
149
+
Asn
GTT
[ENA]
¡û
>WENV170011397
APMI01063013
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
872
798
-
Asn
GTT
[ENA]
¡û
>WENV170229402
CEQG01115211
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
221
295
+
Asn
GTT
[ENA]
¡û
>WENV170308836
CESL01065328
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1185
1111
-
Asn
GTT
[ENA]
¡û
>WENV170337593
CETA01134695
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
387
-
Asn
GTT
[ENA]
¡û
>W141452314
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1806651
1806725
+
Asn
GTT
[ENA]
¡û
>C181186377
CP029985
Alphaproteobacteria
Sphingomonas sp. FARSPH [CP029985]
2598832
2598758
-
Asn
GTT
-
¡û
>W1911247237
NSLI01000001
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
382074
382000
-
Asn
GTT
[ENA]
¡û
>W1911494769
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
669165
669091
-
Asn
GTT
[ENA]
¡û
>W1810195675
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
957214
957288
+
Asn
GTT
[ENA]
¡û
>W1810594357
QFZL01000001
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
1141612
1141686
+
Asn
GTT
[ENA]
¡û
>W2010669828
JACCAP010000001
Alphaproteobacteria
Sphingomonas sp. R1S6C [JACCAP]
1311801
1311875
+
Asn
GTT
[ENA]
¡û
>W2010669973
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
1244051
1243977
-
Asn
GTT
[ENA]
¡û
>W2010706141
JACHJZ010000001
Alphaproteobacteria
Sphingobium sp. B12D2A [JACHJZ]
918968
918894
-
Asn
GTT
[ENA]
¡û
>W2010706161
JACHKA010000001
Alphaproteobacteria
Sphingobium sp. B1D3A [JACHKA]
2050257
2050331
+
Asn
GTT
[ENA]
¡û
>W2010706234
JACHKB010000001
Alphaproteobacteria
Sphingobium sp. B1D3B [JACHKB]
1987169
1987095
-
Asn
GTT
[ENA]
¡û
>W2010706292
JACHKC010000001
Alphaproteobacteria
Sphingobium sp. B1D3D [JACHKC]
219869
219795
-
Asn
GTT
[ENA]
¡û
>W2010709055
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
178185
178111
-
Asn
GTT
[ENA]
¡û
>W2010719158
JACHZH010000008
Alphaproteobacteria
Sphingomonas sp. BK069 [JACHZH]
77608
77534
-
Asn
GTT
[ENA]
¡û
>W2010719951
JACHZX010000005
Alphaproteobacteria
Sphingomonas sp. BK345 [JACHZX]
317241
317167
-
Asn
GTT
[ENA]
¡û
>W2010721305
JACIAY010000004
Alphaproteobacteria
Sphingomonas sp. BK580 [JACIAY]
324757
324683
-
Asn
GTT
[ENA]
¡û
>W2010745996
JACLAU010000009
Alphaproteobacteria
Novosphingobium flavum 4Y4 [JACLAU]
2713
2787
+
Asn
GTT
[ENA]
¡û
>W2010746064
JACLAV010000055
Alphaproteobacteria
Novosphingobium flavum 4Y9 [JACLAV]
10893
10819
-
Asn
GTT
[ENA]
¡û
>W2010746134
JACLAX010000004
Alphaproteobacteria
Novosphingobium piscinae KCTC 42194 [JACLAX]
198950
199024
+
Asn
GTT
[ENA]
¡û
>W2011070742
NSLI01000001
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
382074
382000
-
Asn
GTT
[ENA]
¡û
>W2011155673
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
669165
669091
-
Asn
GTT
[ENA]
¡û
>W2011490359
RSEK01000002
Alphaproteobacteria
Altererythrobacter xinjiangensis CCTCC AB 207166 [RSEK]
314630
314556
-
Asn
GTT
[ENA]
¡û
>W2011623243
SLXN01000001
Alphaproteobacteria
Sphingomonas sp. BK235 [SLXN]
840049
839975
-
Asn
GTT
[ENA]
¡û
>W2110319276
JADHDT010000008
Alphaproteobacteria
Sphingomonas sp. REN5 [JADHDT]
139705
139631
-
Asn
GTT
[ENA]
¡û
>W2110406067
JAEDAI010000001
Alphaproteobacteria
Novosphingopyxis sp. YJ-S2-01 [JAEDAI]
1899283
1899357
+
Asn
GTT
[ENA]
¡û
>W2110425622
JAELTW010000017
Alphaproteobacteria
Sphingomonas sp. ASV18 [JAELTW]
19490
19416
-
Asn
GTT
[ENA]
¡û
>W2110446178
JAERSC010000004
Alphaproteobacteria
Sphingomonas sp. REN5-1 [JAERSC]
60892
60966
+
Asn
GTT
[ENA]
¡û
>W2110663336
JAHXZL010000004
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
69086
69160
+
Asn
GTT
[ENA]
¡û
>W2110663435
JAHXZN010000002
Alphaproteobacteria
Sphingomonas sp. RRHST34 [JAHXZN]
82214
82288
+
Asn
GTT
[ENA]
¡û
>W2110690842
JAIOKB010000007
Alphaproteobacteria
Sphingomonas yunnanensis YIM 3 [JAIOKB]
61940
62014
+
Asn
GTT
[ENA]
¡û
>C201110603
CP042345
Alphaproteobacteria
Novosphingobium ginsenosidimutans FW-6 [CP042345]
2527825
2527751
-
Asn
GTT
-
¡û
>C211134435
CP060495
Alphaproteobacteria
Novosphingopyxis sp. PB63 pb63 [CP060495]
619999
620073
+
Asn
GTT
-
¡û
>C211140946
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
1743640
1743566
-
Asn
GTT
-
¡û
>C231269246
CP090059
Alphaproteobacteria
Sphingomonas cannabina DM2-R-LB4 [CP090059]
2225657
2225583
-
Asn
GTT
-
¡û
>W2110762889
RCVT01000001
Alphaproteobacteria
Sphingomonas sp. MA1305 [RCVT]
1416332
1416406
+
Asn
GTT
[ENA]
¡û
>C241058998
CP041659
Alphaproteobacteria
Sphingomonas xanthus AE3 [CP041659]
294821
294895
+
Asn
GTT
-
¡û
>C241133221
CP049109
Alphaproteobacteria
Sphingosinithalassobacter tenebrarum zrk23 [CP049109]
2060823
2060749
-
Asn
GTT
-
¡û
>C241141790
CP050137
Alphaproteobacteria
Sphingomonas sp. CL5.1 [CP050137]
3037066
3036992
-
Asn
GTT
-
¡û
>C241328249
CP136594
Alphaproteobacteria
Parasphingorhabdus sp. SCSIO 66989 [CP136594]
2073472
2073546
+
Asn
GTT
-
¡û
>C11121263
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
2235959
2236033
+
Asn
GTT
[Ensembl]
¡û
>W11151077
AEWJ01000041
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
168339
168265
-
Asn
GTT
[ENA]
¡û
>W11151078
AEWJ01000041
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
166752
166678
-
Asn
GTT
[ENA]
¡û
>W1610913427
LSJF01000551
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
12031
11957
-
Asn
GTT
[ENA]
¡û
>W1610913686
LSJM01000062
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
23609
23535
-
Asn
GTT
[ENA]
¡û
>W1610914620
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
25534
25608
+
Asn
GTT
[ENA]
¡û
>W1710509101
FMWX01000002
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
47219
47293
+
Asn
GTT
[ENA]
¡û
>W1710542320
FNZB01000001
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
1562854
1562780
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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