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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376360 (8 seq.)
>W1711135265
LUYT01000009
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
71599
71671
+
Arg
CCT
[ENA]
¡û
>W1711270604
LZEK01000007
Bacteroidota
Macellibacteroides sp. HH-ZS [LZEK]
77212
77284
+
Arg
CCT
[ENA]
¡û
>WENV180285491
OBID01461031
[OBID] metagenome; sludge
260
188
-
Arg
CCT
[ENA]
¡û
>WENV170670118
LAHS01051297
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
236
308
+
Arg
CCT
[ENA]
¡û
>WENV170726945
LSQX01399670
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1537
1465
-
Arg
CCT
[ENA]
¡û
>W2010673148
JACCCY010000004
Bacteroidota
Macellibacteroides fermentans DSM 23697 [JACCCY]
143428
143500
+
Arg
CCT
[ENA]
¡û
>W1610946385
LUYT01000009
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
71599
71671
+
Arg
CCT
[ENA]
¡û
>W1710602947
FUYQ01000020
Bacteroidota
Parabacteroides chartae [FUYQ]
42339
42411
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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