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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376366 (77 seq.)
>W1711434409
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
276
350
+
Glu
TTC
[ENA]
¡û
>W1711434420
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
83289
83363
+
Glu
TTC
[ENA]
¡û
>W1711434425
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
286154
286080
-
Glu
TTC
[ENA]
¡û
>C171101772
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630887
1630961
+
Glu
TTC
-
¡û
>C171101794
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2677556
2677630
+
Glu
TTC
-
¡û
>C171101807
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3086862
3086936
+
Glu
TTC
-
¡û
>WENV180176395
OAWD01000081
[OAWD] human gut metagenome; faeces
24848
24922
+
Glu
TTC
[ENA]
¡û
>WENV180498291
OCAG01000047
[OCAG] human gut metagenome; faeces
41775
41849
+
Glu
TTC
[ENA]
¡û
>WENV180498677
OCAG01000876
[OCAG] human gut metagenome; faeces
13042
12968
-
Glu
TTC
[ENA]
¡û
>WENV180504411
OCAN01002420
[OCAN] human gut metagenome; faeces
6378
6304
-
Glu
TTC
[ENA]
¡û
>WENV181360654
OFMX01063145
[OFMX] human gut metagenome; human gut
105
31
-
Glu
TTC
[ENA]
¡û
>WENV181865730
OGWU01082626
[OGWU] human gut metagenome; faeces
459
533
+
Glu
TTC
[ENA]
¡û
>WENV182403344
OIET01003096
[OIET] human gut metagenome; human gut
2325
2399
+
Glu
TTC
[ENA]
¡û
>WENV182405359
OIEV01003504
[OIEV] human gut metagenome; human gut
275
349
+
Glu
TTC
[ENA]
¡û
>WENV182405380
OIEV01003662
[OIEV] human gut metagenome; human gut
2626
2700
+
Glu
TTC
[ENA]
¡û
>WENV182836559
OKFX01005331
[OKFX] human gut metagenome; human gut
199
125
-
Glu
TTC
[ENA]
¡û
>WENV170561615
CZCA01016671
[CZCA] anaerobic digester metagenome; anaerobic digester
654
728
+
Glu
TTC
[ENA]
¡û
>C191064420
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802391
3802465
+
Glu
TTC
-
¡û
>C191064434
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4283925
4283999
+
Glu
TTC
-
¡û
>C191064446
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902028
1901954
-
Glu
TTC
-
¡û
>C191219495
LR215983
Bacillota
Eubacterium limosum [LR215983]
293408
293482
+
Glu
TTC
-
¡û
>C191219505
LR215983
Bacillota
Eubacterium limosum [LR215983]
733465
733539
+
Glu
TTC
-
¡û
>C191219529
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151219
3151145
-
Glu
TTC
-
¡û
>W1810609751
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
394134
394060
-
Glu
TTC
[ENA]
¡û
>W1810609763
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70731
70657
-
Glu
TTC
[ENA]
¡û
>W1810871744
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83835
83909
+
Glu
TTC
[ENA]
¡û
>W2010253757
CABJAI020000009
Bacillota
Eubacterium callanderi [CABJAI]
108109
108035
-
Glu
TTC
[ENA]
¡û
>W2010253772
CABJAI020000041
Bacillota
Eubacterium callanderi [CABJAI]
176
102
-
Glu
TTC
[ENA]
¡û
>W2010258746
CABJDW020000012
Bacillota
Eubacterium limosum [CABJDW]
83835
83909
+
Glu
TTC
[ENA]
¡û
>W2010677145
JACCKS010000008
Bacillota
Eubacterium callanderi AMC0717 [JACCKS]
180072
179998
-
Glu
TTC
[ENA]
¡û
>W2010677170
JACCKS010000019
Bacillota
Eubacterium callanderi AMC0717 [JACCKS]
58009
57935
-
Glu
TTC
[ENA]
¡û
>W2012154802
VUMP01000002
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
82856
82930
+
Glu
TTC
[ENA]
¡û
>W2012154820
VUMP01000006
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
437949
437875
-
Glu
TTC
[ENA]
¡û
>W2110076063
CACRTR010000007
Bacillota
Eubacterium limosum [CACRTR]
84430
84356
-
Glu
TTC
[ENA]
¡û
>W2110076085
CACRTR010000015
Bacillota
Eubacterium limosum [CACRTR]
165
239
+
Glu
TTC
[ENA]
¡û
>W2110076094
CACRTR010000023
Bacillota
Eubacterium limosum [CACRTR]
963004
962930
-
Glu
TTC
[ENA]
¡û
>W2110176655
JABFAG010000005
Bacillota
Eubacterium callanderi GGCC_0197 [JABFAG]
188757
188683
-
Glu
TTC
[ENA]
¡û
>W2110343384
JADMVE010000003
Bacillota
Eubacterium sp. 1001713B170207_170306_E7 [JADMVE]
384
458
+
Glu
TTC
[ENA]
¡û
>W2110343406
JADMVE010000011
Bacillota
Eubacterium sp. 1001713B170207_170306_E7 [JADMVE]
51907
51981
+
Glu
TTC
[ENA]
¡û
>W2110356644
JADNNR010000001
Bacillota
Eubacterium maltosivorans BSD2780120874b_170522_C8 [JADNNR]
27550
27624
+
Glu
TTC
[ENA]
¡û
>W2110356673
JADNNR010000013
Bacillota
Eubacterium maltosivorans BSD2780120874b_170522_C8 [JADNNR]
70811
70737
-
Glu
TTC
[ENA]
¡û
>W2110619581
JAHLOB010000004
Bacillota
Eubacterium callanderi N72 [JAHLOB]
455
529
+
Glu
TTC
[ENA]
¡û
>W2110619594
JAHLOB010000006
Bacillota
Eubacterium callanderi N72 [JAHLOB]
81866
81940
+
Glu
TTC
[ENA]
¡û
>W2110626788
JAHMUG010000002
Bacillota
Eubacterium callanderi KGMB02377 [JAHMUG]
51953
52027
+
Glu
TTC
[ENA]
¡û
>W2110725934
JAJCHU010000015
Bacillota
Eubacterium callanderi DFI.4.61 [JAJCHU]
54196
54270
+
Glu
TTC
[ENA]
¡û
>W2110728138
JAJCKW010000015
Bacillota
Eubacterium callanderi DFI.4.63B [JAJCKW]
54196
54270
+
Glu
TTC
[ENA]
¡û
>W2110728946
JAJCLO010000003
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
558
632
+
Glu
TTC
[ENA]
¡û
>W2110728958
JAJCLO010000005
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
251888
251814
-
Glu
TTC
[ENA]
¡û
>W2110729890
JAJCMN010000015
Bacillota
Eubacterium callanderi DFI.4.62 [JAJCMN]
54196
54270
+
Glu
TTC
[ENA]
¡û
>W10113500
ADGE01000047
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
599
673
+
Glu
TTC
[ENA]
¡û
>W10113503
ADGE01000054
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
355
281
-
Glu
TTC
[ENA]
¡û
>C231384419
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
3951932
3952006
+
Glu
TTC
-
¡û
>C231384432
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
4361238
4361312
+
Glu
TTC
-
¡û
>C231384445
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
2041137
2041063
-
Glu
TTC
-
¡û
>W2310010253
BMAX01000001
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
1157713
1157639
-
Glu
TTC
[ENA]
¡û
>W2310010265
BMAX01000002
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
792590
792516
-
Glu
TTC
[ENA]
¡û
>W2310010285
BMAX01000005
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
178
252
+
Glu
TTC
[ENA]
¡û
>C11108813
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949076
949150
+
Glu
TTC
[Ensembl]
¡û
>C11108833
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3491011
3490937
-
Glu
TTC
[Ensembl]
¡û
>C11108846
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2689228
2689154
-
Glu
TTC
[Ensembl]
¡û
>C11108987
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
1140641
1140567
-
Glu
TTC
[Ensembl]
¡û
>C11109004
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
760748
760674
-
Glu
TTC
[Ensembl]
¡û
>W11116789
ADGE01000047
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
599
673
+
Glu
TTC
[ENA]
¡û
>W11116792
ADGE01000054
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
355
281
-
Glu
TTC
[ENA]
¡û
>W1511480160
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621404
621330
-
Glu
TTC
[ENA]
¡û
>W1511480187
JWIS01000028
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
185
111
-
Glu
TTC
[ENA]
¡û
>C161037782
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
825005
825079
+
Glu
TTC
[Ensembl]
¡û
>C161037807
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248445
3248371
-
Glu
TTC
[Ensembl]
¡û
>C161037821
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2825257
2825183
-
Glu
TTC
[Ensembl]
¡û
>W1710525038
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
60110
60184
+
Glu
TTC
[ENA]
¡û
>W1710525059
FNJF01000043
Bacillota
Eubacterium maltosivorans limosum [FNJF]
12563
12489
-
Glu
TTC
[ENA]
¡û
>W1710571968
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53414
53488
+
Glu
TTC
[ENA]
¡û
>W1710571972
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
483
557
+
Glu
TTC
[ENA]
¡û
>W1710571984
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
483
557
+
Glu
TTC
[ENA]
¡û
>W1710591268
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
367864
367790
-
Glu
TTC
[ENA]
¡û
>W1710591280
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
158
232
+
Glu
TTC
[ENA]
¡û
>W1710591306
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
173066
172992
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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