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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376384 (19 seq.)
>W1712097572
NIDE01000015
Planctomycetota
Fimbriiglobus ruber [NIDE]
70538
70466
-
Gly
GCC
[ENA]
¡û
>WENV180013458
FMSI01085523
[FMSI] soil metagenome; Soil
73
1
-
Gly
GCC
[ENA]
¡û
>WENV180015254
FQKF010459334
[FQKF] soil metagenome; Soil
73
1
-
Gly
GCC
[ENA]
¡û
>WENV180693844
OCZS011663995
[OCZS] soil metagenome; soil
105
177
+
Gly
GCC
[ENA]
¡û
>WENV181123170
OEFO01144174
[OEFO] soil metagenome; soil
53
125
+
Gly
GCC
[ENA]
¡û
>WENV181165047
OEIR01538441
[OEIR] soil metagenome; soil
68
140
+
Gly
GCC
[ENA]
¡û
>W08003873
ABGO01000111
Planctomycetota
Gemmata obscuriglobus UQM 2246 [ABGO]
4921
4993
+
Gly
GCC
[ENA]
¡û
>W141258254
CBXA010000072
Planctomycetota
Gemmata massiliana IIL30 [CBXA]
50205
50133
-
Gly
GCC
[ENA]
¡û
>WENV170713971
LNFM01048903
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
255
183
-
Gly
GCC
[ENA]
¡û
>C181124535
CP025958
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP025958]
8850344
8850416
+
Gly
GCC
-
¡û
>W2010166787
CABFKD010000002
Planctomycetota
Gemmataceae bacterium [CABFKD]
4574450
4574522
+
Gly
GCC
[ENA]
¡û
>W2010681138
JACEFB010000006
Planctomycetota
thermophilic bacterium 2918 [JACEFB]
233213
233141
-
Gly
GCC
[ENA]
¡û
>W2110559634
JAGKQQ010000001
Planctomycetota
Gemmata palustris G18 [JAGKQQ]
4363908
4363836
-
Gly
GCC
[ENA]
¡û
>C241043834
CP036273
Planctomycetota
Urbifossiella limnaea ETA_A1 [CP036273]
489520
489448
-
Gly
GCC
-
¡û
>C241065849
CP042425
Planctomycetota
Limnoglobus roseus PX52 [CP042425]
8421680
8421752
+
Gly
GCC
-
¡û
>C241070002
CP042911
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP042911]
8170446
8170374
-
Gly
GCC
-
¡û
>C241156399
CP053452
Planctomycetota
Frigoriglobus tundricola PL17 [CP053452]
3332938
3333010
+
Gly
GCC
-
¡û
>C241379968
LR593886
Planctomycetota
Gemmata massiliana [LR593886]
1778387
1778459
+
Gly
GCC
-
¡û
>C161033343
CP011271
Planctomycetota
Gemmata sp. SH-PL17 [CP011271]
6939729
6939657
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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