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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376396 (110 seq.)
>W1711767438
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
67204
67278
+
Gln
TTG
[ENA]
¡û
>W1711767439
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
67348
67422
+
Gln
TTG
[ENA]
¡û
>W1711947412
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
589249
589175
-
Gln
TTG
[ENA]
¡û
>W1711947413
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
589106
589032
-
Gln
TTG
[ENA]
¡û
>W1711947495
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
67236
67310
+
Gln
TTG
[ENA]
¡û
>W1711947496
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
67380
67454
+
Gln
TTG
[ENA]
¡û
>W1711947550
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
519420
519346
-
Gln
TTG
[ENA]
¡û
>W1711947551
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
519274
519200
-
Gln
TTG
[ENA]
¡û
>W1711947651
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558832
558758
-
Gln
TTG
[ENA]
¡û
>W1711947652
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558688
558614
-
Gln
TTG
[ENA]
¡û
>W1711947704
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
387027
386953
-
Gln
TTG
[ENA]
¡û
>W1711947705
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
386883
386809
-
Gln
TTG
[ENA]
¡û
>C171034446
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
615854
615928
+
Gln
TTG
-
¡û
>C171034447
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
616000
616074
+
Gln
TTG
-
¡û
>C171108409
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
874014
873940
-
Gln
TTG
-
¡û
>C171108410
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
873868
873794
-
Gln
TTG
-
¡û
>WENV180042179
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1269
1343
+
Gln
TTG
[ENA]
¡û
>WENV182543047
OJAZ01021303
[OJAZ] seawater metagenome; Sea water
198
124
-
Gln
TTG
[ENA]
¡û
>WENV182543688
OJBC01000261
[OJBC] seawater metagenome; Sea water
23825
23899
+
Gln
TTG
[ENA]
¡û
>WENV182557043
OJDI01000503
[OJDI] seawater metagenome; Sea water
15096
15170
+
Gln
TTG
[ENA]
¡û
>WENV182558168
OJDL01009547
[OJDL] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¡û
>WENV182565175
OJEH01000121
[OJEH] seawater metagenome; Sea water
199
125
-
Gln
TTG
[ENA]
¡û
>WENV182565957
OJEI01003382
[OJEI] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¡û
>WENV182566302
OJEJ01008619
[OJEJ] seawater metagenome; Sea water
792
866
+
Gln
TTG
[ENA]
¡û
>WENV182574915
OJFS01007676
[OJFS] seawater metagenome; Sea water
1428
1502
+
Gln
TTG
[ENA]
¡û
>WENV182574916
OJFS01007676
[OJFS] seawater metagenome; Sea water
1574
1648
+
Gln
TTG
[ENA]
¡û
>WENV182575131
OJFU01000100
[OJFU] seawater metagenome; Sea water
23824
23898
+
Gln
TTG
[ENA]
¡û
>WENV182577022
OJGC01000518
[OJGC] seawater metagenome; Sea water
9263
9337
+
Gln
TTG
[ENA]
¡û
>WENV182577419
OJGE01005029
[OJGE] seawater metagenome; Sea water
716
790
+
Gln
TTG
[ENA]
¡û
>WENV182577823
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
291
365
+
Gln
TTG
[ENA]
¡û
>WENV182577824
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
432
506
+
Gln
TTG
[ENA]
¡û
>WENV182580806
OJGW01014011
[OJGW] seawater metagenome; Sea water
1332
1406
+
Gln
TTG
[ENA]
¡û
>WENV182580807
OJGW01014011
[OJGW] seawater metagenome; Sea water
1478
1552
+
Gln
TTG
[ENA]
¡û
>WENV182581573
OJGX01014765
[OJGX] seawater metagenome; Sea water
1181
1255
+
Gln
TTG
[ENA]
¡û
>WENV182581574
OJGX01014765
[OJGX] seawater metagenome; Sea water
1327
1401
+
Gln
TTG
[ENA]
¡û
>WENV182584591
OJHG01002336
[OJHG] seawater metagenome; Sea water
204
130
-
Gln
TTG
[ENA]
¡û
>WENV182588158
OJHO01009711
[OJHO] seawater metagenome; Sea water
199
125
-
Gln
TTG
[ENA]
¡û
>WENV182592682
OJIR01009714
[OJIR] seawater metagenome; Sea water
1428
1502
+
Gln
TTG
[ENA]
¡û
>WENV182592683
OJIR01009714
[OJIR] seawater metagenome; Sea water
1574
1648
+
Gln
TTG
[ENA]
¡û
>WENV182593292
OJIT01026494
[OJIT] seawater metagenome; Sea water
359
433
+
Gln
TTG
[ENA]
¡û
>WENV183057190
OLHK01011741
[OLHK] seawater metagenome; Sea water
1021
1095
+
Gln
TTG
[ENA]
¡û
>WENV183058223
OLHN01025772
[OLHN] seawater metagenome; Sea water
564
490
-
Gln
TTG
[ENA]
¡û
>WENV183058224
OLHN01025772
[OLHN] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¡û
>WENV183059957
OLHW01000802
[OLHW] seawater metagenome; Sea water
2949
3023
+
Gln
TTG
[ENA]
¡û
>WENV183522310
OMOM01002784
[OMOM] seawater metagenome; Sea water
117
191
+
Gln
TTG
[ENA]
¡û
>WENV170305222
CESI01126566
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
110
-
Gln
TTG
[ENA]
¡û
>WENV170780779
MAAB01021308
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
94
20
-
Gln
TTG
[ENA]
¡û
>WENV170781313
MAAB01032184
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1020
1094
+
Gln
TTG
[ENA]
¡û
>WENV170783207
MAAC01014840
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
17994
18068
+
Gln
TTG
[ENA]
¡û
>WENV170783208
MAAC01014840
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
18145
18219
+
Gln
TTG
[ENA]
¡û
>WENV170783248
MAAC01015355
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2108
2034
-
Gln
TTG
[ENA]
¡û
>WENV170820413
MDSY01004256
[MDSY] marine metagenome; seawater
3450
3524
+
Gln
TTG
[ENA]
¡û
>C181169976
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152275
1152201
-
Gln
TTG
-
¡û
>C181169977
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152129
1152055
-
Gln
TTG
-
¡û
>C191128393
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1174024
1173950
-
Gln
TTG
-
¡û
>C191128394
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1173878
1173804
-
Gln
TTG
-
¡û
>W2010689409
JACGVA010000059
Gammaproteobacteria
Colwellia sp. MB3u-8 [JACGVA]
206506
206432
-
Gln
TTG
[ENA]
¡û
>W2010689410
JACGVA010000059
Gammaproteobacteria
Colwellia sp. MB3u-8 [JACGVA]
206368
206294
-
Gln
TTG
[ENA]
¡û
>W2010689495
JACGVB010000094
Gammaproteobacteria
Colwellia sp. MB3u-70 [JACGVB]
216995
216921
-
Gln
TTG
[ENA]
¡û
>W2010689496
JACGVB010000094
Gammaproteobacteria
Colwellia sp. MB3u-70 [JACGVB]
216857
216783
-
Gln
TTG
[ENA]
¡û
>W2010689545
JACGVC010000044
Gammaproteobacteria
Colwellia sp. MB3u-45 [JACGVC]
427584
427510
-
Gln
TTG
[ENA]
¡û
>W2010689546
JACGVC010000044
Gammaproteobacteria
Colwellia sp. MB3u-45 [JACGVC]
427447
427373
-
Gln
TTG
[ENA]
¡û
>W2010689606
JACGVD010000059
Gammaproteobacteria
Colwellia sp. MB3u-43 [JACGVD]
1205
1279
+
Gln
TTG
[ENA]
¡û
>W2010689607
JACGVD010000059
Gammaproteobacteria
Colwellia sp. MB3u-43 [JACGVD]
1342
1416
+
Gln
TTG
[ENA]
¡û
>W2010689684
JACGVE010000079
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
346599
346525
-
Gln
TTG
[ENA]
¡û
>W2010689685
JACGVE010000079
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
346462
346388
-
Gln
TTG
[ENA]
¡û
>W2010689792
JACGVF010000099
Gammaproteobacteria
Colwellia sp. MB02u-9 [JACGVF]
297505
297431
-
Gln
TTG
[ENA]
¡û
>W2010689793
JACGVF010000099
Gammaproteobacteria
Colwellia sp. MB02u-9 [JACGVF]
297368
297294
-
Gln
TTG
[ENA]
¡û
>W2010689825
JACGVG010000027
Gammaproteobacteria
Colwellia sp. MB02u-6 [JACGVG]
577238
577164
-
Gln
TTG
[ENA]
¡û
>W2010689826
JACGVG010000027
Gammaproteobacteria
Colwellia sp. MB02u-6 [JACGVG]
577101
577027
-
Gln
TTG
[ENA]
¡û
>W2010689883
JACGVH010000036
Gammaproteobacteria
Colwellia sp. MB02u-19 [JACGVH]
427590
427516
-
Gln
TTG
[ENA]
¡û
>W2010689884
JACGVH010000036
Gammaproteobacteria
Colwellia sp. MB02u-19 [JACGVH]
427453
427379
-
Gln
TTG
[ENA]
¡û
>W2010689980
JACGVI010000051
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
1243
1317
+
Gln
TTG
[ENA]
¡û
>W2010689981
JACGVI010000051
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
1380
1454
+
Gln
TTG
[ENA]
¡û
>W2010690039
JACGVJ010000044
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
1360
1434
+
Gln
TTG
[ENA]
¡û
>W2010690040
JACGVJ010000044
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
1497
1571
+
Gln
TTG
[ENA]
¡û
>W2010690122
JACGVK010000077
Gammaproteobacteria
Colwellia sp. MB02u-10 [JACGVK]
98307
98381
+
Gln
TTG
[ENA]
¡û
>W2010690123
JACGVK010000077
Gammaproteobacteria
Colwellia sp. MB02u-10 [JACGVK]
98444
98518
+
Gln
TTG
[ENA]
¡û
>W2010690184
JACGVL010000043
Gammaproteobacteria
Colwellia sp. MB02u-1 [JACGVL]
45137
45211
+
Gln
TTG
[ENA]
¡û
>W2010690185
JACGVL010000043
Gammaproteobacteria
Colwellia sp. MB02u-1 [JACGVL]
45274
45348
+
Gln
TTG
[ENA]
¡û
>W2010691169
JACGWA010000001
Gammaproteobacteria
Colwellia sp. BRX10-3 [JACGWA]
1049
1123
+
Gln
TTG
[ENA]
¡û
>W2010691170
JACGWA010000001
Gammaproteobacteria
Colwellia sp. BRX10-3 [JACGWA]
1195
1269
+
Gln
TTG
[ENA]
¡û
>W2010691564
JACGWF010000079
Gammaproteobacteria
Colwellia sp. 6M3 [JACGWF]
15989
15915
-
Gln
TTG
[ENA]
¡û
>W2010691565
JACGWF010000079
Gammaproteobacteria
Colwellia sp. 6M3 [JACGWF]
15843
15769
-
Gln
TTG
[ENA]
¡û
>W2011702406
SWDB01000028
Gammaproteobacteria
Thalassotalea sp. ZS-4 [SWDB]
114863
114937
+
Gln
TTG
[ENA]
¡û
>W2011702407
SWDB01000028
Gammaproteobacteria
Thalassotalea sp. ZS-4 [SWDB]
114989
115063
+
Gln
TTG
[ENA]
¡û
>W2011970863
VCBC01000015
Gammaproteobacteria
Thalassotalea litorea MCCC 1K03283 [VCBC]
59023
59097
+
Gln
TTG
[ENA]
¡û
>W2011970864
VCBC01000015
Gammaproteobacteria
Thalassotalea litorea MCCC 1K03283 [VCBC]
59151
59225
+
Gln
TTG
[ENA]
¡û
>W2012105456
VOLS01000010
Gammaproteobacteria
Colwellia sp. C1TZA3 [VOLS]
16654
16728
+
Gln
TTG
[ENA]
¡û
>W2012105457
VOLS01000010
Gammaproteobacteria
Colwellia sp. C1TZA3 [VOLS]
16798
16872
+
Gln
TTG
[ENA]
¡û
>W2110547294
JAGHQT010000001
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
229080
229154
+
Gln
TTG
[ENA]
¡û
>W2110547295
JAGHQT010000001
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
229210
229284
+
Gln
TTG
[ENA]
¡û
>W2110547297
JAGHQT010000001
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
229494
229568
+
Gln
TTG
[ENA]
¡û
>C211168486
CP062946
Gammaproteobacteria
Thalassotalea sp. LPB0316 [CP062946]
2047378
2047304
-
Gln
TTG
-
¡û
>C211168487
CP062946
Gammaproteobacteria
Thalassotalea sp. LPB0316 [CP062946]
2047252
2047178
-
Gln
TTG
-
¡û
>C211168490
CP062946
Gammaproteobacteria
Thalassotalea sp. LPB0316 [CP062946]
2046886
2046812
-
Gln
TTG
-
¡û
>C231046473
CP040755
Gammaproteobacteria
Colwellia sp. M166 [CP040755]
3814301
3814227
-
Gln
TTG
-
¡û
>C231046474
CP040755
Gammaproteobacteria
Colwellia sp. M166 [CP040755]
3814159
3814085
-
Gln
TTG
-
¡û
>C241011521
AP027364
Gammaproteobacteria
Thalassotalea atypica JCM 31894 [AP027364]
1116226
1116152
-
Gln
TTG
-
¡û
>C241058585
CP041638
Gammaproteobacteria
Thalassotalea sp. PS06 [CP041638]
2279465
2279539
+
Gln
TTG
-
¡û
>C241058589
CP041638
Gammaproteobacteria
Thalassotalea sp. PS06 [CP041638]
2579909
2579983
+
Gln
TTG
-
¡û
>C241058590
CP041638
Gammaproteobacteria
Thalassotalea sp. PS06 [CP041638]
2580035
2580109
+
Gln
TTG
-
¡û
>W2310028732
BSSU01000003
Gammaproteobacteria
Thalassotalea eurytherma JCM 18482 [BSSU]
110252
110326
+
Gln
TTG
[ENA]
¡û
>W2310028733
BSSU01000003
Gammaproteobacteria
Thalassotalea eurytherma JCM 18482 [BSSU]
110375
110449
+
Gln
TTG
[ENA]
¡û
>W2310028736
BSSU01000003
Gammaproteobacteria
Thalassotalea eurytherma JCM 18482 [BSSU]
110736
110810
+
Gln
TTG
[ENA]
¡û
>W2310028834
BSSV01000007
Gammaproteobacteria
Thalassotalea loyana LMG 22536 [BSSV]
165370
165296
-
Gln
TTG
[ENA]
¡û
>W2310028835
BSSV01000007
Gammaproteobacteria
Thalassotalea loyana LMG 22536 [BSSV]
165243
165169
-
Gln
TTG
[ENA]
¡û
>W2310028838
BSSV01000007
Gammaproteobacteria
Thalassotalea loyana LMG 22536 [BSSV]
164876
164802
-
Gln
TTG
[ENA]
¡û
>W1710545223
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
189404
189478
+
Gln
TTG
[ENA]
¡û
>W1710545224
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
189547
189621
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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