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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376466 (38 seq.)
>W1711386874
MEFY01000001
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
527623
527551
-
Gln
TTG
[ENA]
¡û
>W1711505570
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
527236
527164
-
Gln
TTG
[ENA]
¡û
>W1711961756
NCSR01000012
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
22827
22755
-
Gln
TTG
[ENA]
¡û
>WENV180016043
FSTY01000305
[FSTY] metagenome; soil
976
904
-
Gln
TTG
[ENA]
¡û
>WENV180016065
FSTY01000621
[FSTY] metagenome; soil
2480
2406
-
Gln
TTG
[ENA]
¡û
>WENV180017007
FSWJ01000429
[FSWJ] metagenome; soil
18655
18583
-
Gln
TTG
[ENA]
¡û
>WENV180017018
FSWJ01000476
[FSWJ] metagenome; soil
3070
2998
-
Gln
TTG
[ENA]
¡û
>WENV180017384
FSWU01000454
[FSWU] metagenome; soil
44368
44440
+
Gln
TTG
[ENA]
¡û
>WENV180023780
FTIF01000228
[FTIF] metagenome; soil
29200
29272
+
Gln
TTG
[ENA]
¡û
>WENV181222711
OFDC01000117
[OFDC] hot springs metagenome; Water
5624
5552
-
Gln
TTG
[ENA]
¡û
>WENV183697672
OUNK010016013
[OUNK] metagenome; soil
471
399
-
Gln
TTG
[ENA]
¡û
>W1910374291
FUID01000037
Actinomycetota
7(1) [FUID]
32273
32345
+
Gln
TTG
[ENA]
¡û
>W1810089936
PGFB01000003
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
384349
384421
+
Gln
TTG
[ENA]
¡û
>W1810364729
PVTL01000011
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
88988
88916
-
Gln
TTG
[ENA]
¡û
>W2010672196
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
1232071
1232143
+
Gln
TTG
[ENA]
¡û
>W2010709711
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
586908
586980
+
Gln
TTG
[ENA]
¡û
>W2011579417
SHKI01000002
Actinomycetota
Leucobacter luti RF6 [SHKI]
555959
556031
+
Gln
TTG
[ENA]
¡û
>W2011600617
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
1810835
1810763
-
Gln
TTG
[ENA]
¡û
>W2011634043
SMGC01000008
Actinomycetota
Leucobacter luti BIGb0106 [SMGC]
825010
825082
+
Gln
TTG
[ENA]
¡û
>W2011650098
SNYA01000005
Actinomycetota
Leucobacter luti JUb18 [SNYA]
248233
248161
-
Gln
TTG
[ENA]
¡û
>W2012125077
VRMG01000005
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
233678
233750
+
Gln
TTG
[ENA]
¡û
>W2020000178
FUID01000037
Actinomycetota
7(1) [FUID]
32273
32345
+
Gln
TTG
[ENA]
¡û
>W2110023529
BMGB01000002
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
509905
509977
+
Gln
TTG
[ENA]
¡û
>W2110271961
JACVMV010000002
Actinomycetota
Leucobacter sp. cx-87 [JACVMV]
70568
70496
-
Gln
TTG
[ENA]
¡û
>W2110271989
JACVMW010000002
Actinomycetota
Leucobacter sp. cx-169 [JACVMW]
69054
68982
-
Gln
TTG
[ENA]
¡û
>W2110363684
JADOVH010000004
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
4637
4565
-
Gln
TTG
[ENA]
¡û
>W2110438069
JAEPES010000002
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
130298
130370
+
Gln
TTG
[ENA]
¡û
>W2110503960
JAFIRI010000002
Actinomycetota
Leucobacter sp. CX87 [JAFIRI]
70568
70496
-
Gln
TTG
[ENA]
¡û
>C211060584
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
2616615
2616543
-
Gln
TTG
-
¡û
>C211283645
CP071051
Actinomycetota
Leucobacter sp. CX169 [CP071051]
1923405
1923333
-
Gln
TTG
-
¡û
>C211379356
CP080492
Actinomycetota
Leucobacter luti Wa41.01b-2 [CP080492]
3178407
3178479
+
Gln
TTG
-
¡û
>W2110762022
QYAD01000002
Actinomycetota
Leucobacter chromiireducens subsp. chromiireducens L-1 [QYAD]
457849
457921
+
Gln
TTG
[ENA]
¡û
>W2110762142
QYAG01000005
Actinomycetota
Leucobacter luti RF6 [QYAG]
216111
216039
-
Gln
TTG
[ENA]
¡û
>C241017594
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
1314295
1314368
+
Gln
TTG
-
¡û
>C241148471
CP051154
Actinomycetota
Leifsonia sp. PS1209 [CP051154]
2699614
2699542
-
Gln
TTG
-
¡û
>W1511008713
JHBW01000065
Actinomycetota
Leucobacter musarum CBX152 [JHBW]
356318
356390
+
Gln
TTG
[ENA]
¡û
>W1511008765
JHBX01000104
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
209406
209334
-
Gln
TTG
[ENA]
¡û
>W1610730141
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
583397
583469
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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