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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376963 (132 seq.)
>W131196229
ASTD01000118
Bacillota
Dorea sp. 5-2 [ASTD]
56566
56639
+
Gln
TTG
[ENA]
¡û
>W131216417
ATVU01000049
Bacillota
Dorea sp. AGR2135 [ATVU]
10265
10338
+
Gln
TTG
[ENA]
¡û
>W131217783
ATXD01000006
Bacillota
[Clostridium] methoxybenzovorans SR3 [ATXD]
1275055
1275128
+
Gln
TTG
[ENA]
¡û
>W131000817
AGEV01000010
Bacillota
Coprococcus sp. HPP0074 [AGEV]
106845
106916
+
Gln
TTG
[ENA]
¡û
>W1712036112
NFHH01000006
Bacillota
Blautia sp. An81 [NFHH]
41594
41521
-
Gln
TTG
[ENA]
¡û
>W1712037449
NFIF01000009
Bacillota
Blautia sp. An46 [NFIF]
77077
77150
+
Gln
TTG
[ENA]
¡û
>WENV180123439
OASW01002311
[OASW] human gut metagenome; faeces
520
593
+
Gln
TTG
[ENA]
¡û
>WENV180126000
OASZ01000305
[OASZ] human gut metagenome; faeces
34622
34549
-
Gln
TTG
[ENA]
¡û
>WENV180148346
OAUK01000023
[OAUK] human gut metagenome; faeces
54024
53951
-
Gln
TTG
[ENA]
¡û
>WENV180150811
OAUN01040896
[OAUN] human gut metagenome; faeces
262
335
+
Gln
TTG
[ENA]
¡û
>WENV180306318
OBJP01000319
[OBJP] human gut metagenome; human gut
1194
1121
-
Gln
TTG
[ENA]
¡û
>WENV180308225
OBJQ01070987
[OBJQ] human gut metagenome; human gut
177
250
+
Gln
TTG
[ENA]
¡û
>WENV180446512
OBXC01000217
[OBXC] human gut metagenome; faeces
12768
12695
-
Gln
TTG
[ENA]
¡û
>WENV180457988
OBXV01000225
[OBXV] human gut metagenome; faeces
7096
7023
-
Gln
TTG
[ENA]
¡û
>WENV180482393
OBZG01000477
[OBZG] human gut metagenome; faeces
9838
9765
-
Gln
TTG
[ENA]
¡û
>WENV180555083
OCJO01068360
[OCJO] human gut metagenome; human gut
167
238
+
Gln
TTG
[ENA]
¡û
>WENV180572372
OCLU01053959
[OCLU] human gut metagenome; human gut
286
357
+
Gln
TTG
[ENA]
¡û
>WENV180576014
OCLY01078343
[OCLY] human gut metagenome; human gut
5
76
+
Gln
TTG
[ENA]
¡û
>WENV180699143
ODDM01000123
[ODDM] human metagenome; G_DNA_Stool
91479
91408
-
Gln
TTG
[ENA]
¡û
>WENV181030824
ODXJ01007071
[ODXJ] human metagenome; G_DNA_Stool
1350
1277
-
Gln
TTG
[ENA]
¡û
>WENV181089833
OEBA01114382
[OEBA] human metagenome; G_DNA_Stool
332
261
-
Gln
TTG
[ENA]
¡û
>W08003160
ABFY02000030
Bacillota
[Clostridium] scindens ATCC 35704 [ABFY]
169282
169209
-
Gln
TTG
[ENA]
¡û
>WENV181132885
OEGE01026009
[OEGE] human metagenome; G_DNA_Stool
315
386
+
Gln
TTG
[ENA]
¡û
>WENV181200879
OERL01021690
[OERL] metagenome; Caecal content
547
474
-
Gln
TTG
[ENA]
¡û
>WENV181205541
OESB01004226
[OESB] metagenome; Caecal content
569
496
-
Gln
TTG
[ENA]
¡û
>WENV181246185
OFFJ01012707
[OFFJ] mouse gut metagenome; faeces
201
272
+
Gln
TTG
[ENA]
¡û
>W141143851
AWSU01000105
Bacillota
[Clostridium] symbiosum ATCC 14940 [AWSU]
24679
24750
+
Gln
TTG
[ENA]
¡û
>WENV181481767
OGFJ01000015
[OGFJ] metagenome; Human gut stool
174
245
+
Gln
TTG
[ENA]
¡û
>WENV181543476
OGIE01017182
[OGIE] metagenome; Human gut stool
89
160
+
Gln
TTG
[ENA]
¡û
>WENV181569283
OGJK01075686
[OGJK] metagenome; Human gut stool
442
369
-
Gln
TTG
[ENA]
¡û
>WENV181622038
OGMF01034946
[OGMF] metagenome; Human gut stool
1475
1404
-
Gln
TTG
[ENA]
¡û
>WENV181834338
OGUR01000098
[OGUR] metagenome; Human gut stool
37083
37010
-
Gln
TTG
[ENA]
¡û
>WENV181969812
OGZX01000593
[OGZX] human gut metagenome; faeces
179
250
+
Gln
TTG
[ENA]
¡û
>WENV182006510
OHBF01004080
[OHBF] human gut metagenome; feces
2809
2882
+
Gln
TTG
[ENA]
¡û
>WENV182042211
OHDN01001457
[OHDN] human gut metagenome; feces
184
255
+
Gln
TTG
[ENA]
¡û
>WENV182167921
OHMS01008004
[OHMS] human gut metagenome; feces
1778
1705
-
Gln
TTG
[ENA]
¡û
>WENV182200160
OHPL01000033
[OHPL] human gut metagenome; feces
11971
11900
-
Gln
TTG
[ENA]
¡û
>WENV182211459
OHQF01000639
[OHQF] human gut metagenome; feces
9374
9445
+
Gln
TTG
[ENA]
¡û
>WENV182228400
OHRH01001212
[OHRH] human gut metagenome; feces
4182
4255
+
Gln
TTG
[ENA]
¡û
>WENV182257163
OHTF01004278
[OHTF] human gut metagenome; feces
3010
3081
+
Gln
TTG
[ENA]
¡û
>WENV182458300
OINI01000183
[OINI] human gut metagenome; human gut
13502
13429
-
Gln
TTG
[ENA]
¡û
>WENV182715758
OJPI01014069
[OJPI] human gut metagenome; stool sample
139
66
-
Gln
TTG
[ENA]
¡û
>WENV182906038
OKTC01037961
[OKTC] human gut metagenome; feces
99
172
+
Gln
TTG
[ENA]
¡û
>WENV182911207
OKTL01000017
[OKTL] human gut metagenome; feces
92465
92536
+
Gln
TTG
[ENA]
¡û
>WENV183010627
OLDW01008965
[OLDW] human gut metagenome; human gut
162
235
+
Gln
TTG
[ENA]
¡û
>WENV183100672
OLNG01000208
[OLNG] human gut metagenome; faeces
166
239
+
Gln
TTG
[ENA]
¡û
>WENV183129067
OLNZ01044861
[OLNZ] human gut metagenome; faeces
70
141
+
Gln
TTG
[ENA]
¡û
>WENV183167414
OLOZ01000181
[OLOZ] human gut metagenome; faeces
70862
70791
-
Gln
TTG
[ENA]
¡û
>WENV183290432
OLSH01000272
[OLSH] human gut metagenome; faeces
34622
34549
-
Gln
TTG
[ENA]
¡û
>WENV183419587
OMAZ01009699
[OMAZ] human gut metagenome; feces
375
448
+
Gln
TTG
[ENA]
¡û
>WENV183554100
OOBM01000888
[OOBM] human gut metagenome; human gut
17075
17004
-
Gln
TTG
[ENA]
¡û
>WENV183745792
POVV01000779
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
11309
11238
-
Gln
TTG
[ENA]
¡û
>WENV183753518
PPYE01063416
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
607
536
-
Gln
TTG
[ENA]
¡û
>WENV183777160
PPYF01102435
[PPYF] human gut metagenome; stool from patient with Crohn's disease
46911
46984
+
Gln
TTG
[ENA]
¡û
>WENV183778240
PPYF01116302
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7505
7432
-
Gln
TTG
[ENA]
¡û
>WENV183792094
PPYF01450737
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1277
1204
-
Gln
TTG
[ENA]
¡û
>WENV170005415
AMCI01003994
[AMCI] gut metagenome; fecal sample from gut
764
837
+
Gln
TTG
[ENA]
¡û
>WENV170637546
JFBN01329816
[JFBN] chicken gut metagenome; ceca of Broiler chicken
2077
2004
-
Gln
TTG
[ENA]
¡û
>C181064417
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
379095
379168
+
Gln
TTG
-
¡û
>C181191275
CP030280
Bacillota
Blautia argi KCTC 15426 [CP030280]
2839822
2839749
-
Gln
TTG
-
¡û
>W09113638
ABYU02000011
Bacillota
Blautia hansenii DSM 20583 [ABYU]
61746
61673
-
Gln
TTG
[ENA]
¡û
>W1910237435
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52190
52263
+
Gln
TTG
[ENA]
¡û
>W1910501351
FYAL01000013
Bacillota
[Clostridium] celerecrescens [FYAL]
1622478
1622549
+
Gln
TTG
[ENA]
¡û
>W1911742798
QVHE01000004
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
158006
157933
-
Gln
TTG
[ENA]
¡û
>W1911742836
QVHF01000004
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
56596
56669
+
Gln
TTG
[ENA]
¡û
>W1810863399
QTVG01000009
Bacillota
Eubacterium sp. AF36-5BH [QTVG]
92820
92749
-
Gln
TTG
[ENA]
¡û
>W1810872783
QUDZ01000010
Bacillota
Eubacterium sp. AF34-35BH [QUDZ]
76333
76262
-
Gln
TTG
[ENA]
¡û
>W1810875185
QUFT01000012
Bacillota
Clostridium sp. AF24-2LB [QUFT]
34610
34681
+
Gln
TTG
[ENA]
¡û
>W1810875515
QUFZ01000022
Bacillota
Clostridium sp. AF22-10 [QUFZ]
3495
3566
+
Gln
TTG
[ENA]
¡û
>W1810878581
QUIH01000003
Bacillota
Clostridium sp. AM43-3BH [QUIH]
332600
332671
+
Gln
TTG
[ENA]
¡û
>W1810906766
QVGF01000004
Bacillota
Lachnospiraceae bacterium AM25-22 [QVGF]
158006
157933
-
Gln
TTG
[ENA]
¡û
>W1810906908
QVGI01000004
Bacillota
Lachnospiraceae bacterium AM25-11LB [QVGI]
161975
161902
-
Gln
TTG
[ENA]
¡û
>W2010214375
CABHNM010000026
Bacillota
Dorea longicatena [CABHNM]
98965
99038
+
Gln
TTG
[ENA]
¡û
>W2010253382
CABJAB020000005
Bacillota
Lachnospiraceae bacterium [CABJAB]
17698
17769
+
Gln
TTG
[ENA]
¡û
>W2010253999
CABJAN020000027
Bacillota
Firmicutes bacterium [CABJAN]
35112
35039
-
Gln
TTG
[ENA]
¡û
>W2010254760
CABJBA020000010
Bacillota
Clostridiaceae bacterium [CABJBA]
205748
205821
+
Gln
TTG
[ENA]
¡û
>W2010255504
CABJBM020000023
Bacillota
Lachnospiraceae bacterium [CABJBM]
9136
9063
-
Gln
TTG
[ENA]
¡û
>W2010256204
CABJCA020000003
Bacillota
Ruminococcaceae bacterium [CABJCA]
220453
220380
-
Gln
TTG
[ENA]
¡û
>W2010257011
CABJCP020000001
Bacillota
Clostridiales bacterium [CABJCP]
1317860
1317932
+
Gln
TTG
[ENA]
¡û
>W2010258009
CABJDI020000010
Bacillota
Eubacteriaceae bacterium [CABJDI]
76333
76262
-
Gln
TTG
[ENA]
¡û
>W2010259134
CABJEE020000006
Bacillota
Lachnospiraceae bacterium [CABJEE]
39360
39433
+
Gln
TTG
[ENA]
¡û
>W2010382961
FNWC01000006
Bacillota
Tyzzerella sp. Marseille-P3062 [FNWC]
503657
503728
+
Gln
TTG
[ENA]
¡û
>W2010386644
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52190
52263
+
Gln
TTG
[ENA]
¡û
>W2010396642
FTLN01000021
Bacillota
Clostridium sp. Marseille-P2415 [FTLN]
130498
130571
+
Gln
TTG
[ENA]
¡û
>W2010421083
FYAL01000013
Bacillota
[Clostridium] celerecrescens [FYAL]
1622478
1622549
+
Gln
TTG
[ENA]
¡û
>W2010432240
FZRB01000020
Bacillota
Lachnospiraceae bacterium LC2019 [FZRB]
41646
41573
-
Gln
TTG
[ENA]
¡û
>W2010576898
JAAWUJ010000008
Bacillota
Blautia producta MSK.4.17 [JAAWUJ]
105315
105242
-
Gln
TTG
[ENA]
¡û
>W2010576957
JAAWUK010000009
Bacillota
Blautia producta MSK.4.13 [JAAWUK]
5660
5733
+
Gln
TTG
[ENA]
¡û
>W2010577074
JAAWUM010000008
Bacillota
Blautia producta MSK.4.14 [JAAWUM]
105315
105242
-
Gln
TTG
[ENA]
¡û
>W2011307470
QVHE01000004
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
158006
157933
-
Gln
TTG
[ENA]
¡û
>W2011307508
QVHF01000004
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
56596
56669
+
Gln
TTG
[ENA]
¡û
>W2011337215
QXWQ01000037
Bacillota
Clostridiaceae bacterium 1XD21-45 [QXWQ]
64850
64779
-
Gln
TTG
[ENA]
¡û
>W2011669889
SPHM01000060
Bacillota
Pseudoflavonifractor sp. BSD2780061688st1 E11 BSD2780061688st1_E11 [SPHM]
16321
16394
+
Gln
TTG
[ENA]
¡û
>W2011820644
UFXF01000001
Bacillota
[Clostridium] sphenoides NCTC507 [UFXF]
4302380
4302451
+
Gln
TTG
[ENA]
¡û
>W2110075538
CACRSY010000007
Bacillota
Blautia hansenii [CACRSY]
130211
130284
+
Gln
TTG
[ENA]
¡û
>W2110103182
CAJFTW010000134
Bacillota
Candidatus Pseudolachnospira avium [CAJFTW]
9103
9031
-
Gln
TTG
[ENA]
¡û
>W2110103278
CAJFUL010000005
Bacillota
Candidatus Paralachnospira avium [CAJFUL]
15
86
+
Gln
TTG
[ENA]
¡û
>W2110127597
CAJTGE010000005
Bacillota
Clostridiaceae bacterium [CAJTGE]
79076
79147
+
Gln
TTG
[ENA]
¡û
>W2110223654
JACJKS010000001
Bacillota
Mordavella massiliensis An582 [JACJKS]
221
148
-
Gln
TTG
[ENA]
¡û
>W2110238674
JACLYY010000002
Bacillota
Faecalicatena fissicatena An773 [JACLYY]
200528
200455
-
Gln
TTG
[ENA]
¡û
>W2110345413
JADMXY010000003
Bacillota
Dorea longicatena D54t1_190329_D7 [JADMXY]
3421
3348
-
Gln
TTG
[ENA]
¡û
>W2110353738
JADNJM010000060
Bacillota
Drancourtella sp. BSD2780061688b_171218_E11 [JADNJM]
16321
16394
+
Gln
TTG
[ENA]
¡û
>W2110353910
JADNJR010000003
Bacillota
Dorea longicatena 1001136B_160425_G1 [JADNJR]
124476
124549
+
Gln
TTG
[ENA]
¡û
>W2110574751
JAGTTS010000011
Bacillota
Clostridiaceae bacterium Marseille-Q3526 [JAGTTS]
81777
81850
+
Gln
TTG
[ENA]
¡û
>C201308494
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
379786
379859
+
Gln
TTG
-
¡û
>C211136044
CP060634
Bacillota
Lachnospiraceae bacterium NSJ-38 [CP060634]
1171664
1171593
-
Gln
TTG
-
¡û
>W2110720299
JAJBNR010000040
Bacillota
Dorea longicatena MSK.17.50 [JAJBNR]
10359
10286
-
Gln
TTG
[ENA]
¡û
>W2110720897
JAJBOG010000003
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
55613
55540
-
Gln
TTG
[ENA]
¡û
>W2110726935
JAJCIV010000034
Bacillota
Dorea longicatena DFI.6.91 [JAJCIV]
14603
14676
+
Gln
TTG
[ENA]
¡û
>W2110731235
JAJCOF010000045
Bacillota
Dorea formicigenerans DFI.1.72 [JAJCOF]
331
404
+
Gln
TTG
[ENA]
¡û
>W2110731516
JAJCOO010000102
Bacillota
Dorea formicigenerans DFI.1.38 [JAJCOO]
135
62
-
Gln
TTG
[ENA]
¡û
>W2110732311
JAJCPO010000049
Bacillota
Dorea formicigenerans DFI.1.215 [JAJCPO]
14172
14099
-
Gln
TTG
[ENA]
¡û
>W2110732738
JAJCQA010000043
Bacillota
Dorea formicigenerans DFI.1.18 [JAJCQA]
15844
15771
-
Gln
TTG
[ENA]
¡û
>C211378846
CP080442
Bacillota
[Clostridium] scindens Q4 [CP080442]
3401393
3401320
-
Gln
TTG
-
¡û
>W2110735698
JAJDKV010000023
Bacillota
Dorea formicigenerans DFI.6.93 [JAJDKV]
16660
16587
-
Gln
TTG
[ENA]
¡û
>C211423250
LR994468
Bacillota
Blautia argi [LR994468]
512763
512836
+
Gln
TTG
-
¡û
>C231005949
AP024845
Bacillota
Eubacterium sp. c-25 [AP024845]
1792446
1792519
+
Gln
TTG
-
¡û
>C231006009
AP024846
Bacillota
[Clostridium] scindens G10 [AP024846]
2825987
2825914
-
Gln
TTG
-
¡û
>C231016217
AP025570
Bacillota
[Clostridium] scindens CE91-St60 [AP025570]
3027045
3026972
-
Gln
TTG
-
¡û
>C231016351
AP025572
Bacillota
[Clostridium] symbiosum CE91-St66 [AP025572]
3703758
3703687
-
Gln
TTG
-
¡û
>C231047187
CP041667
Bacillota
Lachnospiraceae bacterium KGMB03038 [CP041667]
571585
571656
+
Gln
TTG
-
¡û
>C231449369
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
379096
379169
+
Gln
TTG
-
¡û
>C241099105
CP045695
Bacillota
[Clostridium] scindens BL389WT3D [CP045695]
3253837
3253764
-
Gln
TTG
-
¡û
>C241376841
CP143935
Bacillota
[Clostridium] scindens SL.1.22 [CP143935]
3430739
3430666
-
Gln
TTG
-
¡û
>W2310020376
BSBO01000026
Bacillota
Sellimonas catena 12EGH17 [BSBO]
51719
51646
-
Gln
TTG
[ENA]
¡û
>C10104091
CP002109
Bacillota
[Clostridium] saccharolyticum WM1 [CP002109]
3671440
3671513
+
Gln
TTG
[Ensembl]
¡û
>W11105892
ACTV01000022
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
65174
65101
-
Gln
TTG
[ENA]
¡û
>W11119536
ADLB01000021
Bacillota
Lachnospiraceae bacterium 2_1_46FAA [ADLB]
52737
52666
-
Gln
TTG
[ENA]
¡û
>W121000805
ACWK01000003
Bacillota
Clostridium sp. 7_3_54FAA [ACWK]
59552
59623
+
Gln
TTG
[ENA]
¡û
>W1610188180
FBWN01000258
Bacillota
Clostridium sp. C105KSO15 [FBWN]
6631
6560
-
Gln
TTG
[ENA]
¡û
>W1710189796
FBWN01000258
Bacillota
Clostridium sp. C105KSO15 [FBWN]
6631
6560
-
Gln
TTG
[ENA]
¡û
>W1710554682
FOIP01000001
Bacillota
Lacrimispora sphenoides [FOIP]
2500236
2500165
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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