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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377106 (41 seq.)
>W1710862416
LMEJ01000001
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
506477
506551
+
Asn
GTT
[ENA]
¡û
>W1710863919
LMFM01000011
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
506678
506752
+
Asn
GTT
[ENA]
¡û
>W1710867294
LMID01000013
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
506875
506949
+
Asn
GTT
[ENA]
¡û
>W1710868107
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1863477
1863551
+
Asn
GTT
[ENA]
¡û
>W131237329
AUNZ01000210
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-D21 [AUNZ]
13487
13561
+
Asn
GTT
[ENA]
¡û
>C171095086
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
578773
578699
-
Asn
GTT
-
¡û
>WENV180020223
FTCZ01000094
[FTCZ] metagenome; soil
175
101
-
Asn
GTT
[ENA]
¡û
>WENV180292567
OBIV01510143
[OBIV] soil metagenome; Clay
187
113
-
Asn
GTT
[ENA]
¡û
>WENV180311747
OBJT01533062
[OBJT] soil metagenome; soil
198
124
-
Asn
GTT
[ENA]
¡û
>WENV180691391
OCZS010112953
[OCZS] soil metagenome; soil
927
853
-
Asn
GTT
[ENA]
¡û
>WENV181164996
OEIR01508718
[OEIR] soil metagenome; soil
95
169
+
Asn
GTT
[ENA]
¡û
>WENV181165798
OEIS01189342
[OEIS] soil metagenome; soil
155
81
-
Asn
GTT
[ENA]
¡û
>WENV181184434
OEKC01000249
[OEKC] metagenome; 1998
18337
18411
+
Asn
GTT
[ENA]
¡û
>WENV181192440
OEPS010671807
[OEPS] soil metagenome; soil
127
53
-
Asn
GTT
[ENA]
¡û
>WENV183749529
PPFU01181156
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1424
1350
-
Asn
GTT
[ENA]
¡û
>WENV170003957
AGTN01514278
[AGTN] bioreactor metagenome; poplar biomass
239
313
+
Asn
GTT
[ENA]
¡û
>C181108622
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
1458134
1458208
+
Asn
GTT
-
¡û
>C191095154
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
77013
76939
-
Asn
GTT
-
¡û
>W141564459
JIAU01000004
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
468039
468113
+
Asn
GTT
[ENA]
¡û
>W141779842
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
771106
771180
+
Asn
GTT
[ENA]
¡û
>W1810579400
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
2685584
2685510
-
Asn
GTT
[ENA]
¡û
>C151073192
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
1986813
1986887
+
Asn
GTT
[Ensembl]
¡û
>W2011520905
RZUL01000003
Alphaproteobacteria
Sphingobium sp. TLA-22 [RZUL]
37111
37037
-
Asn
GTT
[ENA]
¡û
>W2011685890
SRXT01000008
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
106977
107051
+
Asn
GTT
[ENA]
¡û
>W2012354001
WJSQ01000031
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
9039
8965
-
Asn
GTT
[ENA]
¡û
>W2110161281
JAAVVE010000004
Alphaproteobacteria
Sphingomonas sp. dw_22 [JAAVVE]
132339
132265
-
Asn
GTT
[ENA]
¡û
>W2110263391
JACTGR010000001
Alphaproteobacteria
Sphingomonas sp. JC676 [JACTGR]
1304394
1304468
+
Asn
GTT
[ENA]
¡û
>C211138759
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
1261208
1261282
+
Asn
GTT
-
¡û
>C231287084
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
3529436
3529510
+
Asn
GTT
-
¡û
>C231287107
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
260515
260441
-
Asn
GTT
-
¡û
>C231441474
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
1082275
1082349
+
Asn
GTT
-
¡û
>C231536489
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
426505
426431
-
Asn
GTT
-
¡û
>C231571796
CP115960
Alphaproteobacteria
Sphingomonas sp. 7/4-4 [CP115960]
1246586
1246660
+
Asn
GTT
-
¡û
>C231595901
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
322811
322737
-
Asn
GTT
-
¡û
>W1511352559
JROH01000011
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
97453
97379
-
Asn
GTT
[ENA]
¡û
>W1511581126
LARW01000115
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
22836
22762
-
Asn
GTT
[ENA]
¡û
>W1610724762
LMEJ01000001
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
506477
506551
+
Asn
GTT
[ENA]
¡û
>W1610726265
LMFM01000011
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
506678
506752
+
Asn
GTT
[ENA]
¡û
>W1610729640
LMID01000013
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
506875
506949
+
Asn
GTT
[ENA]
¡û
>W1610730453
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1863477
1863551
+
Asn
GTT
[ENA]
¡û
>WENV077909
AAFX01123545
Soil microbial communities from Minnesota Farm
538
462
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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