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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377253 (94 seq.)
>W1710805143
LJZT01000148
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
7511
7582
+
Thr
TGT
[ENA]
¡û
>W1711088520
LSYZ01000080
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
18260
18331
+
Thr
TGT
[ENA]
¡û
>W1711088591
LSZA01000073
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
1333
1262
-
Thr
TGT
[ENA]
¡û
>W1711666600
MRCC01000027
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
17431
17360
-
Thr
TGT
[ENA]
¡û
>W131058594
ANFQ01000125
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
17284
17213
-
Thr
TGT
[ENA]
¡û
>W131166666
ARCP01000047
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
12850
12779
-
Thr
TGT
[ENA]
¡û
>W141038418
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3060873
3060802
-
Thr
TGT
[ENA]
¡û
>W141067405
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
1138392
1138321
-
Thr
TGT
[ENA]
¡û
>W141096718
AVFS01000123
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
28167
28238
+
Thr
TGT
[ENA]
¡û
>W141096756
AVFT01000074
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
11244
11315
+
Thr
TGT
[ENA]
¡û
>W141096787
AVFU01000093
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
42281
42352
+
Thr
TGT
[ENA]
¡û
>W141096825
AVFV01000149
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
875
946
+
Thr
TGT
[ENA]
¡û
>W141096865
AVFW01000128
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
71499
71428
-
Thr
TGT
[ENA]
¡û
>W141096905
AVFX01000097
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
46324
46253
-
Thr
TGT
[ENA]
¡û
>W141096913
AVFY01000014
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
45915
45844
-
Thr
TGT
[ENA]
¡û
>W141096956
AVFZ01000074
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
13770
13699
-
Thr
TGT
[ENA]
¡û
>WENV181234665
OFEU01001044
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1167
1096
-
Thr
TGT
[ENA]
¡û
>WENV181411240
OGCI01017413
[OGCI] hot springs metagenome; Hot spring water
1052
1123
+
Thr
TGT
[ENA]
¡û
>W08010760
ABRS01000006
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
119514
119440
-
Thr
TGT
[ENA]
¡û
>W08011360
ABVE01000006
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
166796
166725
-
Thr
TGT
[ENA]
¡û
>WENV170002196
AGSF01000201
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
11769
11840
+
Thr
TGT
[ENA]
¡û
>WENV170640180
JFJP01014194
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6086
6157
+
Thr
TGT
[ENA]
¡û
>WENV170983292
MWVV01018841
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
885
956
+
Thr
TGT
[ENA]
¡û
>WENV170991617
MWWA01260763
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
104
175
+
Thr
TGT
[ENA]
¡û
>WENV170992993
MWWB01149413
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
103
174
+
Thr
TGT
[ENA]
¡û
>WENV170993088
MWWB01179082
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
126
55
-
Thr
TGT
[ENA]
¡û
>WENV170993863
MWWC01020297
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
377
306
-
Thr
TGT
[ENA]
¡û
>WENV170994836
MWWE01065209
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
288
217
-
Thr
TGT
[ENA]
¡û
>C191000800
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
3829193
3829264
+
Thr
TGT
-
¡û
>W1910175475
BJCD01000042
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A NIES-905 [BJCD]
9837
9908
+
Thr
TGT
[ENA]
¡û
>W1910194160
CZCS01000208
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
158131
158060
-
Thr
TGT
[ENA]
¡û
>W1910194199
CZCT02000105
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
3520
3449
-
Thr
TGT
[ENA]
¡û
>W1910194229
CZCU01000111
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
101179
101108
-
Thr
TGT
[ENA]
¡û
>W1910339341
FSSI01000001
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W1910339388
FSSI02000001
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W1910812532
MVDI01000001
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
228654
228725
+
Thr
TGT
[ENA]
¡û
>W1911204874
NRIU01002244
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
13970
14041
+
Thr
TGT
[ENA]
¡û
>W1911638406
PVWN01000014
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
84677
84606
-
Thr
TGT
[ENA]
¡û
>W1810076218
PEIG01000015
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
36614
36543
-
Thr
TGT
[ENA]
¡û
>W2010072392
ATDS01000001
Cyanobacteriota
Microcoleus sp. IPPAS B-353 [ATDS]
2421531
2421602
+
Thr
TGT
[ENA]
¡û
>W2010088699
BJCD01000042
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A NIES-905 [BJCD]
9837
9908
+
Thr
TGT
[ENA]
¡û
>W2010372557
CZCS02000208
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
158131
158060
-
Thr
TGT
[ENA]
¡û
>W2010372596
CZCT02000105
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
3520
3449
-
Thr
TGT
[ENA]
¡û
>W2010372626
CZCU02000111
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
101179
101108
-
Thr
TGT
[ENA]
¡û
>W2010372685
CZCZ02000014
Cyanobacteriota
Planktothrix rubescens PCC 7821 [CZCZ]
915120
915049
-
Thr
TGT
[ENA]
¡û
>W2010372712
CZDF01000148
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
347270
347199
-
Thr
TGT
[ENA]
¡û
>W2010396016
FSSI01000001
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W2010396063
FSSI02000001
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W2010917463
MVDI01000001
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
228654
228725
+
Thr
TGT
[ENA]
¡û
>W2011050185
NRIU01002244
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
13970
14041
+
Thr
TGT
[ENA]
¡û
>W2011230132
PVWN01000014
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
84677
84606
-
Thr
TGT
[ENA]
¡û
>W2011632503
SMDP01000049
Cyanobacteriota
Geitlerinema sp. P-1104 [SMDP]
9355
9284
-
Thr
TGT
[ENA]
¡û
>W2110142690
JAAHBQ010000008
Cyanobacteriota
Oscillatoria salina IIICB1 [JAAHBQ]
94459
94530
+
Thr
TGT
[ENA]
¡û
>W2110226481
JACJOA010000038
Cyanobacteriota
Coleofasciculus sp. FACHB-501 [JACJOA]
47353
47282
-
Thr
TGT
[ENA]
¡û
>W2110226792
JACJOG010000041
Cyanobacteriota
Coleofasciculus sp. FACHB-T130 [JACJOG]
48065
47994
-
Thr
TGT
[ENA]
¡û
>W2110226890
JACJOH010000045
Cyanobacteriota
Coleofasciculus sp. FACHB-129 [JACJOH]
29653
29582
-
Thr
TGT
[ENA]
¡û
>W2110226943
JACJOI010000017
Cyanobacteriota
Coleofasciculus sp. FACHB-125 [JACJOI]
676589
676660
+
Thr
TGT
[ENA]
¡û
>W2110226988
JACJOJ010000056
Cyanobacteriota
Coleofasciculus sp. FACHB-SPT9 [JACJOJ]
2342
2271
-
Thr
TGT
[ENA]
¡û
>W2110227390
JACJOQ010000245
Cyanobacteriota
Coleofasciculus sp. FACHB-712 [JACJOQ]
5558
5487
-
Thr
TGT
[ENA]
¡û
>W2110227567
JACJOT010000015
Cyanobacteriota
Microcoleus sp. FACHB-68 [JACJOT]
10366
10437
+
Thr
TGT
[ENA]
¡û
>W2110227735
JACJOW010000071
Cyanobacteriota
Coleofasciculus sp. FACHB-64 [JACJOW]
183254
183325
+
Thr
TGT
[ENA]
¡û
>W2110231866
JACJSC010000005
Cyanobacteriota
Planktothrix sp. FACHB-1365 [JACJSC]
213405
213334
-
Thr
TGT
[ENA]
¡û
>W2110232326
JACJSL010000072
Cyanobacteriota
Coleofasciculus sp. FACHB-SPT36 [JACJSL]
3405
3476
+
Thr
TGT
[ENA]
¡û
>W2110233900
JACJTV010000015
Cyanobacteriota
Coleofasciculus sp. FACHB-1120 [JACJTV]
131044
131115
+
Thr
TGT
[ENA]
¡û
>W2110311382
JADEWN010000073
Cyanobacteriota
Gloeocapsopsis crepidinum LEGE 06123 [JADEWN]
9203
9132
-
Thr
TGT
[ENA]
¡û
>W2110311692
JADEWU010000055
Cyanobacteriota
Planktothrix mougeotii LEGE 06226 [JADEWU]
31228
31157
-
Thr
TGT
[ENA]
¡û
>W2110311810
JADEWW010000248
Cyanobacteriota
Coleofasciculus sp. LEGE 07081 [JADEWW]
5536
5465
-
Thr
TGT
[ENA]
¡û
>W2110311898
JADEWY010000026
Cyanobacteriota
Coleofasciculus sp. LEGE 07092 [JADEWY]
52762
52691
-
Thr
TGT
[ENA]
¡û
>W2110311953
JADEWZ010000019
Cyanobacteriota
Lusitaniella coriacea LEGE 07157 [JADEWZ]
95837
95766
-
Thr
TGT
[ENA]
¡û
>W2110312614
JADEXN010000113
Cyanobacteriota
Oscillatoriales cyanobacterium LEGE 11467 [JADEXN]
4930
5001
+
Thr
TGT
[ENA]
¡û
>W2110736346
JAJDMN010000001
Cyanobacteriota
Planktothrix agardhii 1813 [JAJDMN]
1419504
1419575
+
Thr
TGT
[ENA]
¡û
>W2110736385
JAJDMO010000001
Cyanobacteriota
Planktothrix agardhii 1810 [JAJDMO]
1423689
1423760
+
Thr
TGT
[ENA]
¡û
>W2110736437
JAJDMP010000001
Cyanobacteriota
Planktothrix agardhii 1809 [JAJDMP]
3332726
3332655
-
Thr
TGT
[ENA]
¡û
>W2110736477
JAJDMQ010000001
Cyanobacteriota
Planktothrix agardhii 1808 [JAJDMQ]
3258095
3258024
-
Thr
TGT
[ENA]
¡û
>W2110736516
JAJDMR010000001
Cyanobacteriota
Planktothrix agardhii 1031 [JAJDMR]
3268960
3268889
-
Thr
TGT
[ENA]
¡û
>W2110736547
JAJDMS010000001
Cyanobacteriota
Planktothrix agardhii 1025 [JAJDMS]
2892880
2892809
-
Thr
TGT
[ENA]
¡û
>C231143116
CP075902
Cyanobacteriota
Phormidium sp. PBR-2020 [CP075902]
1122994
1122923
-
Thr
TGT
-
¡û
>C231404072
CP098611
Cyanobacteriota
Phormidium yuhuli AB48 [CP098611]
1338376
1338305
-
Thr
TGT
-
¡û
>C231651704
LR882934
Cyanobacteriota
Planktothrix agardhii NIVA-CYA126/8 [LR882934]
2585333
2585404
+
Thr
TGT
-
¡û
>C231651747
LR882938
Cyanobacteriota
Planktothrix agardhii No.2A [LR882938]
3959355
3959426
+
Thr
TGT
-
¡û
>C231651787
LR882944
Cyanobacteriota
Planktothrix agardhii No.365 [LR882944]
3667502
3667573
+
Thr
TGT
-
¡û
>C231651827
LR882950
Cyanobacteriota
Planktothrix agardhii PCC7805 [LR882950]
3232644
3232715
+
Thr
TGT
-
¡û
>C231651862
LR882952
Cyanobacteriota
Planktothrix agardhii No.976 [LR882952]
2311967
2312038
+
Thr
TGT
-
¡û
>C231651928
LR882958
Cyanobacteriota
Planktothrix rubescens PCC7821 [LR882958]
475132
475061
-
Thr
TGT
-
¡û
>C231651946
LR882963
Cyanobacteriota
Planktothrix agardhii No.66 [LR882963]
3184078
3184149
+
Thr
TGT
-
¡û
>C231652019
LR882967
Cyanobacteriota
Planktothrix pseudagardhii No.713 [LR882967]
377044
376973
-
Thr
TGT
-
¡û
>W2130014650
JACJPB010000044
Cyanobacteriota
Coleofasciculus sp. FACHB-542 [JACJPB]
47024
46953
-
Thr
TGT
[ENA]
¡û
>C241328064
CP136572
Cyanobacteriota
Planktothrix sp. GU0601_MAG3 [CP136572]
3170222
3170293
+
Thr
TGT
-
¡û
>C11106720
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
3446442
3446513
+
Thr
TGT
[Ensembl]
¡û
>C11106764
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
3446442
3446513
+
Thr
TGT
[Ensembl]
¡û
>W1511535278
JYON01000002
Cyanobacteriota
Aliterella atlantica CENA595 [JYON]
213347
213418
+
Thr
TGT
[ENA]
¡û
>C131004997
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
1943609
1943538
-
Thr
TGT
[Ensembl]
¡û
>W1610669000
LJZT01000148
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
7511
7582
+
Thr
TGT
[ENA]
¡û
>W1610923059
LSYZ01000080
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
18260
18331
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK