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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377311 (27 seq.)
>W141004300
AFXD01000042
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
28645
28716
+
Val
TAC
[ENA]
¡û
>W141038605
ALVZ01000219
Cyanobacteriota
Xenococcus sp. PCC 7305 [ALVZ]
38906
38977
+
Val
TAC
[ENA]
¡û
>W141240116
CAFN01000024
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
25535
25464
-
Val
TAC
[ENA]
¡û
>WENV170233893
CEQJ01075728
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2939
2868
-
Val
TAC
[ENA]
¡û
>WENV170291607
CESA01145202
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
21279
21208
-
Val
TAC
[ENA]
¡û
>WENV170300540
CESG01133310
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2567
2638
+
Val
TAC
[ENA]
¡û
>WENV170822443
MDSY01040033
[MDSY] marine metagenome; seawater
105516
105445
-
Val
TAC
[ENA]
¡û
>W09113170
ABYK01000033
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
44184
44255
+
Val
TAC
[ENA]
¡û
>W09134559
ACSK01001652
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
679
750
+
Val
TAC
[ENA]
¡û
>C181169659
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
1833792
1833863
+
Val
TAC
-
¡û
>W2010088440
BIMW01000013
Cyanobacteriota
Arthrospira platensis NIES-46 [BIMW]
2412
2341
-
Val
TAC
[ENA]
¡û
>W2110217284
JACGXW010000041
Cyanobacteriota
Limnospira fusiformis KN [JACGXW]
11303
11374
+
Val
TAC
[ENA]
¡û
>W2110232805
JACJSX010000061
Cyanobacteriota
Arthrospira platensis FACHB-971 [JACJSX]
27735
27806
+
Val
TAC
[ENA]
¡û
>W2110233465
JACJTL010000064
Cyanobacteriota
Arthrospira platensis FACHB-439 [JACJTL]
27943
28014
+
Val
TAC
[ENA]
¡û
>W2110233726
JACJTS010000062
Cyanobacteriota
Arthrospira platensis FACHB-835 [JACJTS]
28101
28172
+
Val
TAC
[ENA]
¡û
>W2110311950
JADEWZ010000016
Cyanobacteriota
Lusitaniella coriacea LEGE 07157 [JADEWZ]
101196
101125
-
Val
TAC
[ENA]
¡û
>C201246882
CP051185
Cyanobacteriota
Limnospira fusiformis SAG 85.79 [CP051185]
1814791
1814862
+
Val
TAC
-
¡û
>C211234232
CP066886
Cyanobacteriota
Arthrospira sp. PCC 9108 [CP066886]
5687966
5688037
+
Val
TAC
-
¡û
>C211321169
CP073341
Cyanobacteriota
Prochloraceae cyanobacterium LD05 [CP073341]
3757762
3757833
+
Val
TAC
-
¡û
>C231030933
CP019998
Cyanobacteriota
Arthrospira platensis C1 [CP019998]
2485230
2485301
+
Val
TAC
-
¡û
>W10111328
ADDH01000022
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
23356
23427
+
Val
TAC
[ENA]
¡û
>C10114719
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
955202
955131
-
Val
TAC
[Ensembl]
¡û
>W11114271
ADDH01000022
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
23356
23427
+
Val
TAC
[ENA]
¡û
>W1511582897
LATL02000087
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
13091
13162
+
Val
TAC
[ENA]
¡û
>W1511585675
LAYT01000234
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
24433
24362
-
Val
TAC
[ENA]
¡û
>C161049394
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
5494229
5494300
+
Val
TAC
-
¡û
>C161103162
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
3809386
3809315
-
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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