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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377327 (22 seq.)
>W1712038292
NFIV01000001
Bacteroidota
Muribaculum sp. An289 [NFIV]
106996
106924
-
Arg
CCT
[ENA]
¡û
>W1712038847
NFJG01000001
Bacteroidota
Bacteroides sp. An269 [NFJG]
4817
4889
+
Arg
CCT
[ENA]
¡û
>WENV182059586
OHER01000081
[OHER] human gut metagenome; feces
1209
1137
-
Arg
CCT
[ENA]
¡û
>WENV182066368
OHFC01000008
[OHFC] human gut metagenome; feces
130559
130631
+
Arg
CCT
[ENA]
¡û
>WENV182189131
OHOO01000010
[OHOO] human gut metagenome; feces
126250
126322
+
Arg
CCT
[ENA]
¡û
>WENV182398495
OIEN01002681
[OIEN] human gut metagenome; human gut
4658
4730
+
Arg
CCT
[ENA]
¡û
>WENV182661459
OJMN01000155
[OJMN] human gut metagenome; feces
39350
39278
-
Arg
CCT
[ENA]
¡û
>WENV182666990
OJNI01000087
[OJNI] human gut metagenome; feces
2642
2714
+
Arg
CCT
[ENA]
¡û
>WENV182900406
OKSU01000007
[OKSU] human gut metagenome; feces
1754
1682
-
Arg
CCT
[ENA]
¡û
>WENV183108947
OLNN01001372
[OLNN] human gut metagenome; faeces
8099
8171
+
Arg
CCT
[ENA]
¡û
>WENV183161945
OLOV01031269
[OLOV] human gut metagenome; faeces
771
843
+
Arg
CCT
[ENA]
¡û
>WENV183272396
OLRW01025409
[OLRW] human gut metagenome; faeces
203
131
-
Arg
CCT
[ENA]
¡û
>WENV183394215
OLZG01000035
[OLZG] human gut metagenome; feces
78504
78432
-
Arg
CCT
[ENA]
¡û
>WENV183424532
OMBH01001161
[OMBH] human gut metagenome; feces
249
177
-
Arg
CCT
[ENA]
¡û
>WENV183465560
OMEB01000070
[OMEB] human gut metagenome; feces
11443
11515
+
Arg
CCT
[ENA]
¡û
>WENV183468997
OMEI01000070
[OMEI] human gut metagenome; feces
15106
15178
+
Arg
CCT
[ENA]
¡û
>WENV183485469
OMFQ01000058
[OMFQ] human gut metagenome; feces
78511
78439
-
Arg
CCT
[ENA]
¡û
>WENV183639536
OQVI01019778
[OQVI] human gut metagenome; human gut
1554
1482
-
Arg
CCT
[ENA]
¡û
>WENV170026479
CDTW01044297
[CDTW] gut metagenome; human stools
15188
15260
+
Arg
CCT
[ENA]
¡û
>WENV170053211
CDZD01014766
[CDZD] gut metagenome; human stools
1959
1887
-
Arg
CCT
[ENA]
¡û
>WENV170055630
CDZF01013940
[CDZF] gut metagenome; human stools
398
470
+
Arg
CCT
[ENA]
¡û
>W2110238741
JACLYZ010000006
Bacteroidota
Mediterranea massiliensis An772 [JACLYZ]
93501
93573
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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