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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377409 (133 seq.)
>W1711074688
LSJT01000093
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
13005
13077
+
Gln
CTG
[ENA]
¡û
>W131222403
AUBF01000007
Actinomycetota
Schaalia suimastitidis DSM 15538 [AUBF]
75503
75575
+
Gln
CTG
[ENA]
¡û
>W1711664271
MQVT01000030
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
17526
17598
+
Gln
CTG
[ENA]
¡û
>W1711664283
MQVU01000002
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
138573
138645
+
Gln
CTG
[ENA]
¡û
>C171127451
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2413710
2413638
-
Gln
CTG
-
¡û
>WENV180102903
OAOZ01047399
[OAOZ] marine metagenome; ENVO:00002010
271
345
+
Gln
CTG
[ENA]
¡û
>WENV180209540
OBAL01003386
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
87
15
-
Gln
CTG
[ENA]
¡û
>WENV180212383
OBAN01019810
[OBAN] marine metagenome; ENVO 00002150
476
404
-
Gln
CTG
[ENA]
¡û
>WENV180356842
OBNL01049976
[OBNL] marine metagenome; ENVO:00002010
174
100
-
Gln
CTG
[ENA]
¡û
>WENV180367074
OBOE01008497
[OBOE] marine metagenome; ENVO:00002010
155
81
-
Gln
CTG
[ENA]
¡û
>WENV180382243
OBOS01168341
[OBOS] marine metagenome; ENVO 00002150
112
184
+
Gln
CTG
[ENA]
¡û
>WENV180394829
OBPS01103287
[OBPS] marine metagenome; ENVO:00002010 seawater
124
196
+
Gln
CTG
[ENA]
¡û
>WENV180398075
OBPZ01069789
[OBPZ] marine metagenome; ENVO:00002010
352
278
-
Gln
CTG
[ENA]
¡û
>WENV180399141
OBQG01001327
[OBQG] marine metagenome; ENV:00002010
422
348
-
Gln
CTG
[ENA]
¡û
>WENV180399311
OBQH01002337
[OBQH] marine metagenome; ENV:00002010
180
254
+
Gln
CTG
[ENA]
¡û
>WENV180399509
OBQO01000041
[OBQO] marine metagenome; ENVO:00002010
5060
5134
+
Gln
CTG
[ENA]
¡û
>WENV181322148
OFKP01011499
[OFKP] marine metagenome; sea ice
12
86
+
Gln
CTG
[ENA]
¡û
>WENV181322593
OFKT01003346
[OFKT] marine metagenome; sea ice
251
177
-
Gln
CTG
[ENA]
¡û
>WENV181323840
OFKZ01012677
[OFKZ] marine metagenome; sea ice
481
555
+
Gln
CTG
[ENA]
¡û
>WENV181324561
OFLF01002460
[OFLF] marine metagenome; melt pond
648
574
-
Gln
CTG
[ENA]
¡û
>WENV181325671
OFLJ01012976
[OFLJ] seawater metagenome; seawater
572
646
+
Gln
CTG
[ENA]
¡û
>WENV181370490
OFQS01022751
[OFQS] freshwater metagenome; Freshwater Lake
492
420
-
Gln
CTG
[ENA]
¡û
>WENV181393159
OFRX01061988
[OFRX] seawater metagenome; seawater
129
203
+
Gln
CTG
[ENA]
¡û
>WENV181856155
OGWM01029794
[OGWM] freshwater metagenome; freshwater
233
161
-
Gln
CTG
[ENA]
¡û
>WENV183615152
OOEA01081916
[OOEA] marine metagenome; sea ice
194
120
-
Gln
CTG
[ENA]
¡û
>WENV183615315
OOEB01002614
[OOEB] marine metagenome; sea ice
713
639
-
Gln
CTG
[ENA]
¡û
>WENV183619523
OOFQ01013086
[OOFQ] marine metagenome; seawater
572
646
+
Gln
CTG
[ENA]
¡û
>WENV183620885
OOFT01000004
[OOFT] marine metagenome; sea ice
36383
36457
+
Gln
CTG
[ENA]
¡û
>WENV183622895
OOFW01038466
[OOFW] marine metagenome; sea ice
176
102
-
Gln
CTG
[ENA]
¡û
>WENV183623218
OOFX01034455
[OOFX] marine metagenome; sea ice
205
277
+
Gln
CTG
[ENA]
¡û
>WENV183624370
OOGD01003888
[OOGD] marine metagenome; sea ice
502
576
+
Gln
CTG
[ENA]
¡û
>WENV183625855
OOGG01053601
[OOGG] marine metagenome; sea ice
304
378
+
Gln
CTG
[ENA]
¡û
>WENV183629539
OOGP01064014
[OOGP] marine metagenome; seawater
129
203
+
Gln
CTG
[ENA]
¡û
>WENV170011150
APMI01046152
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
216
142
-
Gln
CTG
[ENA]
¡û
>WENV170567506
FLMP01001249
[FLMP] seawater metagenome; seawater
7700
7626
-
Gln
CTG
[ENA]
¡û
>WENV170598278
FUWD010030884
[FUWD] metagenome; unknown
398
324
-
Gln
CTG
[ENA]
¡û
>WENV170605950
FUWD010572304
[FUWD] metagenome; unknown
82
8
-
Gln
CTG
[ENA]
¡û
>WENV170627176
FUWD013231783
[FUWD] metagenome; unknown
24314
24240
-
Gln
CTG
[ENA]
¡û
>WENV170632181
FUWD013379091
[FUWD] metagenome; unknown
24314
24240
-
Gln
CTG
[ENA]
¡û
>WENV170951524
MEHZ011557766
[MEHZ] marine metagenome; marine surface water
627
701
+
Gln
CTG
[ENA]
¡û
>WENV170979743
MTKZ01105260
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
197
123
-
Gln
CTG
[ENA]
¡û
>C181143946
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1956923
1956851
-
Gln
CTG
-
¡û
>C191071509
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
4222824
4222896
+
Gln
CTG
-
¡û
>W1910405319
FVBY01002460
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 159 [FVBY]
125
197
+
Gln
CTG
[ENA]
¡û
>W1910785520
MQTR01000183
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
97747
97819
+
Gln
CTG
[ENA]
¡û
>W1911752283
QWLM01000003
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
282046
281974
-
Gln
CTG
[ENA]
¡û
>W1810168705
PJJL01000070
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
249085
249157
+
Gln
CTG
[ENA]
¡û
>W1810168761
PJJM01000101
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
80149
80221
+
Gln
CTG
[ENA]
¡û
>W1810168807
PJJN01000036
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
146484
146412
-
Gln
CTG
[ENA]
¡û
>W1810168892
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
578277
578205
-
Gln
CTG
[ENA]
¡û
>W1810168935
PJJQ01000034
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
460286
460358
+
Gln
CTG
[ENA]
¡û
>W1810168950
PJJR01000041
Actinomycetota
Cryobacterium sp. N19 [PJJR]
58216
58288
+
Gln
CTG
[ENA]
¡û
>W1810169056
PJJT01000086
Actinomycetota
Cryobacterium sp. M91 [PJJT]
92797
92725
-
Gln
CTG
[ENA]
¡û
>W1810169198
PJJW01000039
Actinomycetota
Cryobacterium sp. M15 [PJJW]
237167
237239
+
Gln
CTG
[ENA]
¡û
>W1810242620
PPXD01000026
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
93223
93151
-
Gln
CTG
[ENA]
¡û
>W1810242648
PPXE01000020
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
96722
96650
-
Gln
CTG
[ENA]
¡û
>W1810242677
PPXF01000011
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
91023
90951
-
Gln
CTG
[ENA]
¡û
>W1810627280
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
1177172
1177100
-
Gln
CTG
[ENA]
¡û
>C151039208
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
2114419
2114347
-
Gln
CTG
[Ensembl]
¡û
>W2010106055
BKAC01000005
Actinomycetota
Cryobacterium levicorallinum NBRC 107883 [BKAC]
120792
120864
+
Gln
CTG
[ENA]
¡û
>W2010521471
JAANNA010000004
Actinomycetota
Dermacoccus nishinomiyaensis IC4_133 [JAANNA]
128323
128251
-
Gln
CTG
[ENA]
¡û
>W2010691760
JACGWU010000002
Actinomycetota
Alpinimonas psychrophila DSM 23737 [JACGWU]
147536
147464
-
Gln
CTG
[ENA]
¡û
>W2010894047
MQTR01000183
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
97747
97819
+
Gln
CTG
[ENA]
¡û
>W2011320528
QWLM01000003
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
282046
281974
-
Gln
CTG
[ENA]
¡û
>W2011403446
RCUV01000009
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
32549
32477
-
Gln
CTG
[ENA]
¡û
>W2011404179
RCWJ01000001
Actinomycetota
Mycetocola zhadangensis ZD1-4 [RCWJ]
575859
575931
+
Gln
CTG
[ENA]
¡û
>SRA1045629
SRR035093.137275
454 Sequencing (SRP001814)
208
282
+
Gln
CTG
[SRA]
>W2011554025
SEHL01000004
Actinomycetota
Dermacoccus sp. 147Ba [SEHL]
9069
8997
-
Gln
CTG
[ENA]
¡û
>SRA1046319
SRR035093.278528
454 Sequencing (SRP001814)
66
140
+
Gln
CTG
[SRA]
>SRA1046828
SRR035093.394459
454 Sequencing (SRP001814)
212
286
+
Gln
CTG
[SRA]
>W2011633552
SMFS01000001
Actinomycetota
Dermacoccus sp. DS28 SAI-028 [SMFS]
2076942
2076870
-
Gln
CTG
[ENA]
¡û
>SRA1047148
SRR035093.468827
454 Sequencing (SRP001814)
232
158
-
Gln
CTG
[SRA]
>SRA1047247
SRR035093.494448
454 Sequencing (SRP001814)
235
309
+
Gln
CTG
[SRA]
>W2011659472
SOEY01000031
Actinomycetota
Cryobacterium sp. HLT2-23 [SOEY]
58103
58175
+
Gln
CTG
[ENA]
¡û
>W2011659653
SOFC01000023
Actinomycetota
Cryobacterium sp. Hz9 [SOFC]
39194
39122
-
Gln
CTG
[ENA]
¡û
>W2011659683
SOFD01000028
Actinomycetota
Cryobacterium flavum Hh8 [SOFD]
33026
32954
-
Gln
CTG
[ENA]
¡û
>W2011659712
SOFE01000008
Actinomycetota
Cryobacterium levicorallinum Hh34 [SOFE]
93474
93402
-
Gln
CTG
[ENA]
¡û
>W2011659769
SOFF01000029
Actinomycetota
Cryobacterium luteum Hh15 [SOFF]
265089
265161
+
Gln
CTG
[ENA]
¡û
>W2011660048
SOFL01000036
Actinomycetota
Cryobacterium sp. RHLS22-1 [SOFL]
154226
154154
-
Gln
CTG
[ENA]
¡û
>W2011660540
SOFW01000037
Actinomycetota
Cryobacterium sp. TMT1-3 [SOFW]
275552
275624
+
Gln
CTG
[ENA]
¡û
>W2011660563
SOFX01000020
Actinomycetota
Cryobacterium sp. TMN-39-2 [SOFX]
96713
96641
-
Gln
CTG
[ENA]
¡û
>W2011660678
SOFZ01000029
Actinomycetota
Cryobacterium sp. TMB1-7 [SOFZ]
576885
576813
-
Gln
CTG
[ENA]
¡û
>W2011660731
SOGA01000040
Actinomycetota
Cryobacterium sp. TMB3-1-2 [SOGA]
152365
152437
+
Gln
CTG
[ENA]
¡û
>W2011660943
SOGF01000026
Actinomycetota
Cryobacterium sp. TMS1-20-1 [SOGF]
111214
111142
-
Gln
CTG
[ENA]
¡û
>W2011660974
SOGG01000006
Actinomycetota
Cryobacterium sp. TMB3-15 [SOGG]
152345
152417
+
Gln
CTG
[ENA]
¡û
>W2011661018
SOGH01000002
Actinomycetota
Cryobacterium sp. TMB3-10 [SOGH]
152355
152427
+
Gln
CTG
[ENA]
¡û
>W2011661098
SOGI01000064
Actinomycetota
Cryobacterium sp. TMT4-31 [SOGI]
39339
39411
+
Gln
CTG
[ENA]
¡û
>W2011661405
SOGP01000008
Actinomycetota
Cryobacterium sp. TMT1-66-1 [SOGP]
120989
120917
-
Gln
CTG
[ENA]
¡û
>W2011661551
SOGS01000014
Actinomycetota
Cryobacterium sp. TMT1-2-2 [SOGS]
21383
21311
-
Gln
CTG
[ENA]
¡û
>W2011661587
SOGT01000006
Actinomycetota
Cryobacterium sp. TMT1-1 [SOGT]
266979
267053
+
Gln
CTG
[ENA]
¡û
>W2011661796
SOGX01000019
Actinomycetota
Cryobacterium sp. TMS1-13-1 [SOGX]
183834
183762
-
Gln
CTG
[ENA]
¡û
>W2011661826
SOGY01000033
Actinomycetota
Cryobacterium sp. TMB3-12 [SOGY]
39348
39420
+
Gln
CTG
[ENA]
¡û
>W2011662057
SOHD01000029
Actinomycetota
Cryobacterium sp. Hh38 [SOHD]
120918
120990
+
Gln
CTG
[ENA]
¡û
>W2011662131
SOHF01000011
Actinomycetota
Cryobacterium sp. Hh11 [SOHF]
295026
295098
+
Gln
CTG
[ENA]
¡û
>W2011662187
SOHG01000032
Actinomycetota
Cryobacterium sp. Hh7 [SOHG]
59906
59978
+
Gln
CTG
[ENA]
¡û
>W2011662276
SOHI01000028
Actinomycetota
Cryobacterium sp. Hb1 [SOHI]
253900
253972
+
Gln
CTG
[ENA]
¡û
>W2011662287
SOHJ01000002
Actinomycetota
Cryobacterium sp. Sr39 [SOHJ]
38941
39013
+
Gln
CTG
[ENA]
¡û
>W2011662342
SOHK01000005
Actinomycetota
Cryobacterium sp. Sr36 [SOHK]
373885
373957
+
Gln
CTG
[ENA]
¡û
>W2011662380
SOHL01000003
Actinomycetota
Cryobacterium sp. Hz16 [SOHL]
280938
280866
-
Gln
CTG
[ENA]
¡û
>W2011662453
SOHM01000030
Actinomycetota
Cryobacterium sp. Sr59 [SOHM]
246832
246904
+
Gln
CTG
[ENA]
¡û
>W2011662472
SOHN01000005
Actinomycetota
Cryobacterium sp. Sr54 [SOHN]
31180
31108
-
Gln
CTG
[ENA]
¡û
>W2011698570
SUPQ01000001
Actinomycetota
Dermacoccus nishinomiyaensis TSA37 [SUPQ]
259290
259218
-
Gln
CTG
[ENA]
¡û
>W2011821870
UFXX01000002
Actinomycetota
Dermacoccus nishinomiyaensis NCTC11039 [UFXX]
196671
196599
-
Gln
CTG
[ENA]
¡û
>W2011993744
VDZB01000004
Actinomycetota
Dermacoccus nishinomiyaensis DE0382 [VDZB]
256079
256007
-
Gln
CTG
[ENA]
¡û
>W2011996804
VECS01000001
Actinomycetota
Dermacoccus nishinomiyaensis DE0240 [VECS]
262938
262866
-
Gln
CTG
[ENA]
¡û
>W2012000340
VEFV01000004
Actinomycetota
Dermacoccus nishinomiyaensis DE0125 [VEFV]
256093
256021
-
Gln
CTG
[ENA]
¡û
>W2110021305
BMEK01000001
Actinomycetota
Mycetocola zhadangensis CGMCC 1.12042 [BMEK]
574397
574469
+
Gln
CTG
[ENA]
¡û
>W2110047710
BMXM01000006
Actinomycetota
Mycetocola manganoxydans KCTC 19753 [BMXM]
139037
139109
+
Gln
CTG
[ENA]
¡û
>W2110304813
JADCTK010000002
Actinomycetota
Dermacoccus barathri HZAU 234 [JADCTK]
304997
305069
+
Gln
CTG
[ENA]
¡û
>W2110325647
JADIJQ010000001
Actinomycetota
Tessaracoccus sp. SD287 [JADIJQ]
179887
179815
-
Gln
CTG
[ENA]
¡û
>W2110522706
JAGEKQ010000030
Actinomycetota
Dermacoccus sp. NHGro5 [JAGEKQ]
14785
14857
+
Gln
CTG
[ENA]
¡û
>W2110573739
JAGTHU010000015
Actinomycetota
Dermacoccus sp. Tok2021 [JAGTHU]
82775
82847
+
Gln
CTG
[ENA]
¡û
>W2110669402
JAIEUL010000005
Actinomycetota
Cryobacterium sp. 1639 [JAIEUL]
4201
4129
-
Gln
CTG
[ENA]
¡û
>C211132096
CP060292
Actinomycetota
Dermacoccus sp. PAMC28757 [CP060292]
1761136
1761208
+
Gln
CTG
-
¡û
>C211208115
CP065521
Actinomycetota
Schaalia sp. 19OD2882 [CP065521]
1847511
1847439
-
Gln
CTG
-
¡û
>C211377347
CP080383
Actinomycetota
Cryobacterium sp. PAMC25264 [CP080383]
2004958
2004886
-
Gln
CTG
-
¡û
>C231113109
CP067394
Actinomycetota
Cryobacterium sp. SO1 [CP067394]
2542135
2542063
-
Gln
CTG
-
¡û
>C231165027
CP080203
Actinomycetota
Mycetocola spongiae MSC19 [CP080203]
3183747
3183819
+
Gln
CTG
-
¡û
>C231602135
CP117849
Actinomycetota
Cryobacterium sp. SO2 [CP117849]
2565070
2564998
-
Gln
CTG
-
¡û
>C241008708
AP026800
Actinomycetota
Bombiscardovia apis KimH [AP026800]
336356
336428
+
Gln
CTG
-
¡û
>C241071335
CP043031
Actinomycetota
Dermacoccus abyssi HZAU 226 [CP043031]
1911291
1911219
-
Gln
CTG
-
¡û
>C241204365
CP107945
Actinomycetota
Streptomyces sp. NBC_00390 [CP107945]
2556441
2556369
-
Gln
CTG
-
¡û
>C241245474
CP121684
Actinomycetota
Lysinibacter sp. HNR [CP121684]
656964
657038
+
Gln
CTG
-
¡û
>W2310029769
BSTX01000003
Actinomycetota
Actinorhabdospora filicis NBRC 111898 [BSTX]
618221
618147
-
Gln
CTG
[ENA]
¡û
>W11138477
AEIQ01000127
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
12979
12907
-
Gln
CTG
[ENA]
¡û
>W1511629612
LDCM01000003
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
281766
281838
+
Gln
CTG
[ENA]
¡û
>C161095697
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2522186
2522114
-
Gln
CTG
[Ensembl]
¡û
>W121063462
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
424034
424108
+
Gln
CTG
[ENA]
¡û
>W1610913993
LSJT01000093
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
13005
13077
+
Gln
CTG
[ENA]
¡û
>W1710523547
FNIB01000009
Actinomycetota
Cryobacterium flavum [FNIB]
111559
111631
+
Gln
CTG
[ENA]
¡û
>W1710546918
FOCN01000004
Actinomycetota
Cryobacterium luteum [FOCN]
265306
265378
+
Gln
CTG
[ENA]
¡û
>W1710563679
FOPW01000006
Actinomycetota
Cryobacterium levicorallinum [FOPW]
92813
92741
-
Gln
CTG
[ENA]
¡û
>W1710570909
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
131759
131831
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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