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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377600 (72 seq.)
>W1710881883
LMTJ01000008
Bacillota
Bacillus sp. FJAT-29814 [LMTJ]
1267
1341
+
Cys
GCA
[ENA]
¡û
>W1711100937
LTMC01000100
Bacillota
Staphylococcus sp. HMSC65H10 [LTMC]
389
463
+
Cys
GCA
[ENA]
¡û
>W1711102048
LTNJ01000038
Bacillota
Staphylococcus sp. HMSC070A03 [LTNJ]
38392
38318
-
Cys
GCA
[ENA]
¡û
>W1711102087
LTNK01000066
Bacillota
Staphylococcus sp. HMSC070A02 [LTNK]
114
40
-
Cys
GCA
[ENA]
¡û
>W1711102884
LTOC01000122
Bacillota
Staphylococcus sp. HMSC078A12 [LTOC]
294
220
-
Cys
GCA
[ENA]
¡û
>W1711318917
MAYU01000008
Bacillota
Bacillus sp. FJAT-27225 [MAYU]
59
133
+
Cys
GCA
[ENA]
¡û
>W131226838
AUER01000011
Bacillota
Bacillus sp. URHB0009 [AUER]
132400
132326
-
Cys
GCA
[ENA]
¡û
>W131251356
CAVL010000036
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
44553
44479
-
Cys
GCA
[ENA]
¡û
>W1711538963
MLYR01000106
Bacillota
Bacillus sp. MUM 116 [MLYR]
36907
36833
-
Cys
GCA
[ENA]
¡û
>W1711792226
MWJM01000008
Bacillota
Mammaliicoccus fleurettii [MWJM]
133875
133801
-
Cys
GCA
[ENA]
¡û
>W141021473
AJLR01000093
Bacillota
Schinkia azotoformans LMG 9581 [AJLR]
42119
42045
-
Cys
GCA
[ENA]
¡û
>W141168475
AXVA01000001
Bacillota
Bacillus sp. UNC438CL73TsuS30 [AXVA]
1395
1469
+
Cys
GCA
[ENA]
¡û
>WENV170692630
LGOV01017532
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
561
487
-
Cys
GCA
[ENA]
¡û
>WENV170695411
LGVE01087681
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5979
5905
-
Cys
GCA
[ENA]
¡û
>WENV170698148
LGVF01272009
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2914
2840
-
Cys
GCA
[ENA]
¡û
>C181217039
LS483491
Bacillota
Staphylococcus auricularis NCTC12101 [LS483491]
1483337
1483263
-
Cys
GCA
-
¡û
>C181225654
LT906462
Bacillota
Mammaliicoccus stepanovicii NCTC13839 [LT906462]
840035
840109
+
Cys
GCA
-
¡û
>C191098785
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
5272698
5272624
-
Cys
GCA
-
¡û
>W1910225488
FMSO01000005
Bacillota
Bacillus massiliglaciei Marseille-P2600 [FMSO]
1306
1380
+
Cys
GCA
[ENA]
¡û
>W1911617287
PPQW01000059
Bacillota
Staphylococcus auricularis NCTC 12101 [PPQW]
7767
7693
-
Cys
GCA
[ENA]
¡û
>W1911617451
PPQZ01000034
Bacillota
Staphylococcus stepanovicii DSM 26319 [PPQZ]
2447
2373
-
Cys
GCA
[ENA]
¡û
>W1911676168
QGPZ01000149
Bacillota
Rummeliibacillus sp. TYF005 [QGPZ]
93
167
+
Cys
GCA
[ENA]
¡û
>W1911760393
QWUA01000006
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1552
1626
+
Cys
GCA
[ENA]
¡û
>W1810194439
PKOZ01000025
Bacillota
Pradoshia eiseniae EAG3 [PKOZ]
14652
14578
-
Cys
GCA
[ENA]
¡û
>W1810435216
PZDH01000053
Bacillota
Staphylococcus auricularis SNUC 3034 [PZDH]
1166
1092
-
Cys
GCA
[ENA]
¡û
>W1810435279
PZDI01000083
Bacillota
Staphylococcus auricularis SNUC 993 [PZDI]
1595
1521
-
Cys
GCA
[ENA]
¡û
>W1810489629
QBBX01000018
Bacillota
Peribacillus acanthi XY-L28 [QBBX]
77952
77878
-
Cys
GCA
[ENA]
¡û
>W1810915285
QVTD01000011
Bacillota
Peribacillus glennii V44-8 [QVTD]
765
839
+
Cys
GCA
[ENA]
¡û
>W2010215400
CABHPS010000026
Bacillota
Bacillus marasmi Marseille-P3556 [CABHPS]
1230
1304
+
Cys
GCA
[ENA]
¡û
>W2010380116
FMSO01000005
Bacillota
Bacillus massiliglaciei Marseille-P2600 [FMSO]
1306
1380
+
Cys
GCA
[ENA]
¡û
>W2010528859
JAAOEO010000009
Bacillota
Bacillus sp. C11 [JAAOEO]
218254
218180
-
Cys
GCA
[ENA]
¡û
>W2010612222
JABRWH010000001
Bacillota
Bacillus sp. BRMEA1 [JABRWH]
2601411
2601485
+
Cys
GCA
[ENA]
¡û
>W2010701058
JACHGK010000001
Bacillota
Bacillus benzoevorans DSM 5391 [JACHGK]
1996
2070
+
Cys
GCA
[ENA]
¡û
>W2010701112
JACHGK010000015
Bacillota
Bacillus benzoevorans DSM 5391 [JACHGK]
85994
85920
-
Cys
GCA
[ENA]
¡û
>W2010983596
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
2294842
2294916
+
Cys
GCA
[ENA]
¡û
>W2011210510
PPQW01000059
Bacillota
Staphylococcus auricularis NCTC 12101 [PPQW]
7767
7693
-
Cys
GCA
[ENA]
¡û
>W2011210674
PPQZ01000034
Bacillota
Staphylococcus stepanovicii DSM 26319 [PPQZ]
2447
2373
-
Cys
GCA
[ENA]
¡û
>W2011253062
QGPZ01000149
Bacillota
Rummeliibacillus sp. TYF005 [QGPZ]
93
167
+
Cys
GCA
[ENA]
¡û
>W2011323485
QWUA01000006
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1552
1626
+
Cys
GCA
[ENA]
¡û
>W2011429368
RIAV01000031
Bacillota
Bacillus sp. SYSU K30001 [RIAV]
1690
1764
+
Cys
GCA
[ENA]
¡û
>W2011498067
RXNT01000017
Bacillota
Bacillus sp. XXST-01 [RXNT]
1662
1736
+
Cys
GCA
[ENA]
¡û
>W2011534129
SCFM01000050
Bacillota
Bacillus funiculus W18-2 [SCFM]
97
168
+
Cys
GCA
[ENA]
¡û
>W2011534141
SCFM01000058
Bacillota
Bacillus funiculus W18-2 [SCFM]
684
758
+
Cys
GCA
[ENA]
¡û
>W2011620690
SLVV01000010
Bacillota
Bacillus foraminis CV53 [SLVV]
41516
41590
+
Cys
GCA
[ENA]
¡û
>W2011641848
SMYO01000014
Bacillota
Bacillus sp. WN066 [SMYO]
105667
105593
-
Cys
GCA
[ENA]
¡û
>W2011697957
SUND01000017
Bacillota
Bacillus sp. XXST-01 [SUND]
1662
1736
+
Cys
GCA
[ENA]
¡û
>W2011701568
SWBM01000001
Bacillota
Bacillus kyonggiensis NB22 [SWBM]
1731
1805
+
Cys
GCA
[ENA]
¡û
>W2011971019
VCBL01000001
Bacillota
Rummeliibacillus suwonensis G20 [VCBL]
2337
2411
+
Cys
GCA
[ENA]
¡û
>W2011971097
VCBM01000013
Bacillota
Rummeliibacillus sp. SL167 [VCBM]
1001
927
-
Cys
GCA
[ENA]
¡û
>W2012142470
VTQJ01000008
Bacillota
Staphylococcus auricularis DE0381 [VTQJ]
30311
30237
-
Cys
GCA
[ENA]
¡û
>W2110020171
BMDM01000002
Bacillota
Staphylococcus stepanovicii CCM 7717 [BMDM]
451415
451341
-
Cys
GCA
[ENA]
¡û
>W2110284515
JACXSI010000003
Bacillota
Peribacillus faecalis AGMB 02131 [JACXSI]
94939
94865
-
Cys
GCA
[ENA]
¡û
>W2110409594
JAEHGC010000013
Bacillota
Neobacillus cucumis T4S4 [JAEHGC]
155369
155295
-
Cys
GCA
[ENA]
¡û
>W2110427543
JAEMBY010000004
Bacillota
Rummeliibacillus suwonensis 3B-1 [JAEMBY]
194263
194189
-
Cys
GCA
[ENA]
¡û
>W2110446199
JAERSD010000004
Bacillota
Bacillus sp. REN3 [JAERSD]
294184
294110
-
Cys
GCA
[ENA]
¡û
>W2110532370
JAGEVN010000018
Bacillota
Mammaliicoccus fleurettii G20-3 [JAGEVN]
1668
1742
+
Cys
GCA
[ENA]
¡û
>W2110532497
JAGEVQ010000032
Bacillota
Mammaliicoccus vitulinus B19-5C [JAGEVQ]
67152
67078
-
Cys
GCA
[ENA]
¡û
>W2110544808
JAGGQL010000018
Bacillota
Bacillus sp. ISL-37 [JAGGQL]
5107
5033
-
Cys
GCA
[ENA]
¡û
>W2110545024
JAGGQP010000009
Bacillota
Bacillus sp. ISL-41 [JAGGQP]
1899
1973
+
Cys
GCA
[ENA]
¡û
>W2110545120
JAGGQQ010000012
Bacillota
Bacillus sp. ISL-45 [JAGGQQ]
1703
1777
+
Cys
GCA
[ENA]
¡û
>W2110545789
JAGGRC010000002
Bacillota
Mesobacillus foraminis ISL-89 [JAGGRC]
831937
831863
-
Cys
GCA
[ENA]
¡û
>W2110573148
JAGSWQ010000007
Bacillota
Staphylococcus simulans 1H5 [JAGSWQ]
123225
123151
-
Cys
GCA
[ENA]
¡û
>C211022251
AP024589
Bacillota
Staphylococcus auricularis JCM 2421 [AP024589]
1524702
1524628
-
Cys
GCA
-
¡û
>C211083544
CP050459
Bacillota
Mammaliicoccus vitulinus Ani_LG-101 [CP050459]
1456597
1456671
+
Cys
GCA
-
¡û
>C211213420
CP065712
Bacillota
Staphylococcus auricularis FDAARGOS_882 [CP065712]
868528
868602
+
Cys
GCA
-
¡û
>W2110707081
JAIWKA010000002
Bacillota
Mesobacillus jeotgali KcN21-7 [JAIWKA]
141146
141072
-
Cys
GCA
[ENA]
¡û
>C231361330
CP095462
Bacillota
Bacillus sp. JY-23 [CP095462]
3015426
3015500
+
Cys
GCA
-
¡û
>W2110761858
QVVG01000023
Bacillota
Staphylococcus auricularis s52 [QVVG]
25736
25662
-
Cys
GCA
[ENA]
¡û
>W2130034266
JAGSWU010000025
Bacillota
Staphylococcus auricularis 1H20 [JAGSWU]
26476
26402
-
Cys
GCA
[ENA]
¡û
>W1610690266
LLER01000012
Bacillota
Staphylococcus auricularis [LLER]
53637
53563
-
Cys
GCA
[ENA]
¡û
>W1610743918
LMTJ01000008
Bacillota
Bacillus sp. FJAT-29814 [LMTJ]
1267
1341
+
Cys
GCA
[ENA]
¡û
>W1611062232
MAYU01000008
Bacillota
Bacillus sp. FJAT-27225 [MAYU]
59
133
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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