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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377643 (50 seq.)
>W1711009539
LQQT01000034
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
183920
183994
+
Gly
CCC
[ENA]
¡û
>W1711573734
MNDV01000095
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
10914
10988
+
Gly
CCC
[ENA]
¡û
>C171072651
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
534168
534242
+
Gly
CCC
-
¡û
>WENV181163623
OEIQ01127882
[OEIQ] soil metagenome; soil
119
45
-
Gly
CCC
[ENA]
¡û
>WENV181165107
OEIR01587554
[OEIR] soil metagenome; soil
52
126
+
Gly
CCC
[ENA]
¡û
>WENV181165460
OEIS01001678
[OEIS] soil metagenome; soil
68
142
+
Gly
CCC
[ENA]
¡û
>C08000342
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
260304
260233
-
Gly
CCC
[Ensembl]
¡û
>WENV171003331
NNBT01005022
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3181
3255
+
Gly
CCC
[ENA]
¡û
>W1911705894
QORU01000012
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
261725
261651
-
Gly
CCC
[ENA]
¡û
>W1911708676
QOZQ01000005
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
412700
412774
+
Gly
CCC
[ENA]
¡û
>W1810368577
PVZS01000002
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
117044
116970
-
Gly
CCC
[ENA]
¡û
>SRA1005326
SRR006907.178866
metagenomic water samples (SRP000427)
71
145
+
Gly
CCC
[SRA]
>C151094733
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
1991217
1991291
+
Gly
CCC
-
¡û
>W2010080294
BGJY01000022
Alphaproteobacteria
Methylosinus sporium DSM 17706 [BGJY]
46498
46572
+
Gly
CCC
[ENA]
¡û
>W2010459202
JAAFZE010000026
Alphaproteobacteria
Methylocystis sp. MJC1 [JAAFZE]
20935
21009
+
Gly
CCC
[ENA]
¡û
>W2010698451
JACHEH010000006
Alphaproteobacteria
Chelatococcus composti DSM 101465 [JACHEH]
98558
98484
-
Gly
CCC
[ENA]
¡û
>W2010725901
JACIEN010000006
Alphaproteobacteria
Chelatococcus caeni DSM 103737 [JACIEN]
179918
179992
+
Gly
CCC
[ENA]
¡û
>W2011280497
QORU01000012
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
261725
261651
-
Gly
CCC
[ENA]
¡û
>W2011281814
QOZQ01000005
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
412700
412774
+
Gly
CCC
[ENA]
¡û
>W2011541134
SCPA01000001
Alphaproteobacteria
Rhizobiales bacterium X1A [SCPA]
752004
752078
+
Gly
CCC
[ENA]
¡û
>W2011541259
SCPC01000031
Alphaproteobacteria
Rhizobiales bacterium X2C [SCPC]
44780
44706
-
Gly
CCC
[ENA]
¡û
>W2011541299
SCPD01000002
Alphaproteobacteria
Y(2018) [SCPD]
315266
315192
-
Gly
CCC
[ENA]
¡û
>W2011621837
SLWL01000012
Alphaproteobacteria
Camelimonas lactis DSM 22958 [SLWL]
145901
145827
-
Gly
CCC
[ENA]
¡û
>W2011659076
SOEJ01000007
Alphaproteobacteria
Methylosinus sp. sav-2 [SOEJ]
109046
108972
-
Gly
CCC
[ENA]
¡û
>W2011663122
SOPH01000002
Alphaproteobacteria
Methylocystis heyeri H2 [SOPH]
121037
121111
+
Gly
CCC
[ENA]
¡û
>W2110021702
BMES01000001
Alphaproteobacteria
Alsobacter metallidurans CGMCC 1.12214 [BMES]
740575
740501
-
Gly
CCC
[ENA]
¡û
>W2110025850
BMHX01000006
Alphaproteobacteria
Chelatococcus composti CGMCC 1.15283 [BMHX]
98518
98444
-
Gly
CCC
[ENA]
¡û
>W2110054300
BNCG01000074
Alphaproteobacteria
Camelimonas fluminis KCTC 42282 [BNCG]
6104
6030
-
Gly
CCC
[ENA]
¡û
>W2110432662
JAENHL010000008
Alphaproteobacteria
Aestuariivirga sp. YIM B02566 [JAENHL]
1705941
1706015
+
Gly
CCC
[ENA]
¡û
>W2110446703
JAERVJ010000003
Alphaproteobacteria
Methylocystis sp. Sn-Cys [JAERVJ]
490713
490787
+
Gly
CCC
[ENA]
¡û
>W2110481298
JAFDUY010000003
Alphaproteobacteria
Chelatococcus daeguensis M38T9 [JAFDUY]
183896
183970
+
Gly
CCC
[ENA]
¡û
>W2110591651
JAHBRZ010000001
Alphaproteobacteria
Chelatococcus composti DSM 101465 [JAHBRZ]
1995371
1995445
+
Gly
CCC
[ENA]
¡û
>W2110610193
JAHKJX010000001
Alphaproteobacteria
Methylocystis sp. MJC1 [JAHKJX]
2662002
2661928
-
Gly
CCC
[ENA]
¡û
>W2110687582
JAINDZ010000020
Alphaproteobacteria
Methylosinus sp. Sm6 [JAINDZ]
23223
23297
+
Gly
CCC
[ENA]
¡û
>C231041382
CP032674
Alphaproteobacteria
Xanthobacter sp. YC-JY1 [CP032674]
3998197
3998271
+
Gly
CCC
-
¡û
>C231326001
CP092968
Alphaproteobacteria
Methylocystis parvus OBBP [CP092968]
3942251
3942325
+
Gly
CCC
-
¡û
>C231516819
CP107558
Alphaproteobacteria
Methylocystis sp. MJC1 [CP107558]
2662002
2661928
-
Gly
CCC
-
¡û
>W10118835
ADVE01000032
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
36139
36213
+
Gly
CCC
[ENA]
¡û
>C241105201
CP046052
Alphaproteobacteria
Methylocystis heyeri H2 [CP046052]
4165728
4165654
-
Gly
CCC
-
¡û
>C241135330
CP049258
Alphaproteobacteria
Nordella sp. HKS 07 [CP049258]
3204106
3204032
-
Gly
CCC
-
¡û
>C241373981
CP143314
Alphaproteobacteria
Methylocystis iwaonis SD4 [CP143314]
1237400
1237474
+
Gly
CCC
-
¡û
>W1510741131
CYHC01000006
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
127494
127420
-
Gly
CCC
[ENA]
¡û
>W11125007
ADVE01000032
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
36139
36213
+
Gly
CCC
[ENA]
¡û
>W11150225
AEVM01000005
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
178142
178216
+
Gly
CCC
[ENA]
¡û
>W121110803
ALIQ01000212
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
30219
30293
+
Gly
CCC
[ENA]
¡û
>W121068004
AJTV01000052
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
20264
20338
+
Gly
CCC
[ENA]
¡û
>W1610631765
LIOL01000006
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
127494
127420
-
Gly
CCC
[ENA]
¡û
>W1610858059
LQQT01000034
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
183920
183994
+
Gly
CCC
[ENA]
¡û
>WENV077423
AAFX01036318
Soil microbial communities from Minnesota Farm
693
617
-
Gly
CCC
[ENA]
>W1710764650
LIOL01000006
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
127494
127420
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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