This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377665 (39 seq.)
>W1711303105
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
594738
594812
+
Thr
GGT
[ENA]
¡û
>W1711682920
MRYA01000004
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
207568
207642
+
Thr
GGT
[ENA]
¡û
>W1711683016
MRYC01000030
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
939
865
-
Thr
GGT
[ENA]
¡û
>W1711766694
MUYT01000004
Gammaproteobacteria
Moraxella lincolnii [MUYT]
586214
586140
-
Thr
GGT
[ENA]
¡û
>C171019149
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1472232
1472158
-
Thr
GGT
-
¡û
>C017922
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2548081
2548007
-
Thr
GGT
[Ensembl]
¡û
>W141055138
AOMT01000024
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
53739
53813
+
Thr
GGT
[ENA]
¡û
>W141195671
AYUI01000039
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
1795
1721
-
Thr
GGT
[ENA]
¡û
>W141199939
AYXM01000028
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
23505
23579
+
Thr
GGT
[ENA]
¡û
>W141199986
AYXN01000014
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
27603
27677
+
Thr
GGT
[ENA]
¡û
>W141233968
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
632294
632368
+
Thr
GGT
[ENA]
¡û
>W141234018
BAWH01000014
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
82964
83038
+
Thr
GGT
[ENA]
¡û
>WENV182542209
OJAV01012111
[OJAV] seawater metagenome; Sea water
121
195
+
Thr
GGT
[ENA]
¢þ
>WENV182550167
OJBZ01007470
[OJBZ] seawater metagenome; Sea water
1113
1187
+
Thr
GGT
[ENA]
¢þ
>WENV182562543
OJDZ01008383
[OJDZ] seawater metagenome; Sea water
467
541
+
Thr
GGT
[ENA]
¢þ
>WENV182591958
OJIO01025006
[OJIO] seawater metagenome; Sea water
314
388
+
Thr
GGT
[ENA]
¢þ
>WENV183709022
PDWI01022892
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5972
5898
-
Thr
GGT
[ENA]
¢þ
>WENV183709319
PDWI01026878
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
391
317
-
Thr
GGT
[ENA]
¢þ
>WENV183721023
PDWJ01052577
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2098
2024
-
Thr
GGT
[ENA]
¢þ
>WENV183721845
PDWJ01090573
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
283
357
+
Thr
GGT
[ENA]
¢þ
>WENV170121471
CENM01029429
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
223
297
+
Thr
GGT
[ENA]
¢þ
>WENV170136938
CENV01117327
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
571
497
-
Thr
GGT
[ENA]
¢þ
>WENV170241903
CEQO01016313
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2728
2802
+
Thr
GGT
[ENA]
¢þ
>WENV170488450
CEVO01211579
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
301
227
-
Thr
GGT
[ENA]
¢þ
>C191163864
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2654271
2654197
-
Thr
GGT
-
¡û
>W1910372546
FUGE01000250
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
3015
3089
+
Thr
GGT
[ENA]
¡û
>W1910977036
NKHK01000036
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
6501
6427
-
Thr
GGT
[ENA]
¡û
>W1911397566
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2303374
2303448
+
Thr
GGT
[ENA]
¡û
>W1810155514
PJAT01000103
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
254
180
-
Thr
GGT
[ENA]
¡û
>W1810156349
PJBF01000060
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
859
785
-
Thr
GGT
[ENA]
¡û
>W1810157271
PJBU01000113
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
144724
144798
+
Thr
GGT
[ENA]
¡û
>W1810157403
PJBY01000001
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
498
424
-
Thr
GGT
[ENA]
¡û
>W1810671424
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
598
524
-
Thr
GGT
[ENA]
¡û
>W11163498
AFHU01000190
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
385
311
-
Thr
GGT
[ENA]
¡û
>C161034463
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
1857644
1857570
-
Thr
GGT
[Ensembl]
¡û
>C161034491
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
339309
339383
+
Thr
GGT
-
¡û
>C161034560
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1889859
1889785
-
Thr
GGT
-
¡û
>C161034609
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
2052066
2051992
-
Thr
GGT
[Ensembl]
¡û
>W1710513795
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
331528
331602
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK