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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37773 (105 seq.)
>W1711043865
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
101498
101412
-
Ser
CGA
[ENA]
¡û
>W1711092657
LTEH01000004
Actinomycetota
Actinomyces sp. HMSC075B09 [LTEH]
82379
82465
+
Ser
CGA
[ENA]
¡û
>W1711112264
LTXG01000029
Actinomycetota
Actinomyces sp. HMSC065F11 [LTXG]
19046
18958
-
Ser
CGA
[ENA]
¡û
>W1711169815
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
746283
746371
+
Ser
CGA
[ENA]
¡û
>W1711186260
LWOB01000309
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
4677
4588
-
Ser
CGA
[ENA]
¡û
>W131217130
ATWL01000009
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
9313
9401
+
Ser
CGA
[ENA]
¡û
>W131001241
AGWN01000001
Actinomycetota
Gleimia europaea ACS-120-V-Col10b [AGWN]
1339120
1339208
+
Ser
CGA
[ENA]
¡û
>WENV180698097
ODDE01033346
[ODDE] human metagenome; G_DNA_Supragingival plaque
455
369
-
Ser
CGA
[ENA]
¢þ
>WENV180727562
ODGU01007782
[ODGU] human metagenome; G_DNA_Supragingival plaque
115
201
+
Ser
CGA
[ENA]
¢þ
>WENV180735293
ODGZ01136375
[ODGZ] human metagenome; G_DNA_Supragingival plaque
52
138
+
Ser
CGA
[ENA]
¢þ
>WENV180735966
ODHB01002437
[ODHB] human metagenome; G_DNA_Supragingival plaque
48
134
+
Ser
CGA
[ENA]
¢þ
>WENV180750528
ODHS01003229
[ODHS] human metagenome; G_DNA_Supragingival plaque
6646
6733
+
Ser
CGA
[ENA]
¢þ
>WENV180777701
ODIL01056786
[ODIL] human metagenome; G_DNA_Supragingival plaque
68
154
+
Ser
CGA
[ENA]
¢þ
>WENV180778755
ODIM01068522
[ODIM] human metagenome; G_DNA_Supragingival plaque
247
161
-
Ser
CGA
[ENA]
¢þ
>WENV180782326
ODIP01085620
[ODIP] human metagenome; G_DNA_Supragingival plaque
32
118
+
Ser
CGA
[ENA]
¢þ
>WENV180787550
ODIS01008287
[ODIS] human metagenome; G_DNA_Supragingival plaque
3798
3712
-
Ser
CGA
[ENA]
¢þ
>WENV180796634
ODJB01008573
[ODJB] human metagenome; G_DNA_Supragingival plaque
93
179
+
Ser
CGA
[ENA]
¢þ
>WENV180804577
ODJG01006356
[ODJG] human metagenome; G_DNA_Supragingival plaque
33
119
+
Ser
CGA
[ENA]
¢þ
>WENV180813797
ODJO01002608
[ODJO] human metagenome; G_DNA_Supragingival plaque
4984
4898
-
Ser
CGA
[ENA]
¢þ
>WENV180833910
ODKD01000904
[ODKD] human metagenome; G_DNA_Supragingival plaque
2750
2664
-
Ser
CGA
[ENA]
¢þ
>WENV180842664
ODKM01117157
[ODKM] human metagenome; G_DNA_Buccal mucosa
194
108
-
Ser
CGA
[ENA]
¢þ
>WENV180844495
ODKN01154667
[ODKN] human metagenome; G_DNA_Supragingival plaque
67
153
+
Ser
CGA
[ENA]
¢þ
>WENV180847917
ODKT01249097
[ODKT] human metagenome; G_DNA_Supragingival plaque
40
126
+
Ser
CGA
[ENA]
¢þ
>WENV180889804
ODMN01157144
[ODMN] human metagenome; G_DNA_Supragingival plaque
232
146
-
Ser
CGA
[ENA]
¢þ
>WENV180927704
ODTM01002686
[ODTM] human metagenome; G_DNA_Supragingival plaque
6975
6889
-
Ser
CGA
[ENA]
¢þ
>WENV180933272
ODTR01000005
[ODTR] human metagenome; G_DNA_Supragingival plaque
218058
218145
+
Ser
CGA
[ENA]
¢þ
>WENV180934679
ODTS01001099
[ODTS] human metagenome; G_DNA_Subgingival plaque
1019
932
-
Ser
CGA
[ENA]
¢þ
>WENV180939993
ODTX01166108
[ODTX] human metagenome; G_DNA_Supragingival plaque
243
157
-
Ser
CGA
[ENA]
¢þ
>WENV180958864
ODUL01082987
[ODUL] human metagenome; G_DNA_Supragingival plaque
29
115
+
Ser
CGA
[ENA]
¢þ
>WENV180964533
ODUO01004151
[ODUO] human metagenome; G_DNA_Supragingival plaque
3759
3673
-
Ser
CGA
[ENA]
¢þ
>WENV180973897
ODUW01023975
[ODUW] human metagenome; G_DNA_Supragingival plaque
518
606
+
Ser
CGA
[ENA]
¢þ
>WENV180974089
ODUW01060550
[ODUW] human metagenome; G_DNA_Supragingival plaque
40
126
+
Ser
CGA
[ENA]
¢þ
>WENV180987026
ODVK01003393
[ODVK] human metagenome; G_DNA_Supragingival plaque
5019
4933
-
Ser
CGA
[ENA]
¢þ
>WENV180999130
ODVT01006872
[ODVT] human metagenome; G_DNA_Buccal mucosa
3807
3721
-
Ser
CGA
[ENA]
¢þ
>WENV181003228
ODVX01006944
[ODVX] human metagenome; G_DNA_Supragingival plaque
246
160
-
Ser
CGA
[ENA]
¢þ
>WENV181008055
ODWE01001684
[ODWE] human metagenome; G_DNA_Supragingival plaque
9392
9306
-
Ser
CGA
[ENA]
¢þ
>WENV181020353
ODWU01134336
[ODWU] human metagenome; G_DNA_Supragingival plaque
67
153
+
Ser
CGA
[ENA]
¢þ
>WENV181030281
ODXF01124700
[ODXF] human metagenome; G_DNA_Supragingival plaque
25
111
+
Ser
CGA
[ENA]
¢þ
>WENV181051173
ODYD01235626
[ODYD] human metagenome; G_DNA_Supragingival plaque
203
117
-
Ser
CGA
[ENA]
¢þ
>WENV181063918
ODYP01005380
[ODYP] human metagenome; G_DNA_Supragingival plaque
72
158
+
Ser
CGA
[ENA]
¢þ
>WENV181070960
OEAE01047665
[OEAE] human metagenome; G_DNA_Supragingival plaque
74
160
+
Ser
CGA
[ENA]
¢þ
>WENV181077861
OEAP01191254
[OEAP] human metagenome; G_DNA_Supragingival plaque
228
142
-
Ser
CGA
[ENA]
¢þ
>WENV181083309
OEAV01004801
[OEAV] human metagenome; G_DNA_Supragingival plaque
5019
4933
-
Ser
CGA
[ENA]
¢þ
>WENV181092044
OEBC01203499
[OEBC] human metagenome; G_DNA_Supragingival plaque
71
157
+
Ser
CGA
[ENA]
¢þ
>WENV181144114
OEHM01099776
[OEHM] human metagenome; G_DNA_Supragingival plaque
47
133
+
Ser
CGA
[ENA]
¢þ
>WENV181147061
OEHQ01107084
[OEHQ] human metagenome; G_DNA_Supragingival plaque
52
138
+
Ser
CGA
[ENA]
¢þ
>WENV181156762
OEIE01100887
[OEIE] human metagenome; G_DNA_Supragingival plaque
45
131
+
Ser
CGA
[ENA]
¢þ
>WENV181161140
OEIK01169861
[OEIK] human metagenome; G_DNA_Supragingival plaque
242
156
-
Ser
CGA
[ENA]
¢þ
>WENV181178250
OEJS01118886
[OEJS] human metagenome; G_DNA_Supragingival plaque
52
138
+
Ser
CGA
[ENA]
¢þ
>WENV181180718
OEJU01000847
[OEJU] human metagenome; G_DNA_Supragingival plaque
10726
10812
+
Ser
CGA
[ENA]
¢þ
>WENV181183099
OEJV01195250
[OEJV] human metagenome; G_DNA_Supragingival plaque
3
89
+
Ser
CGA
[ENA]
¢þ
>W141143139
AWSB01000089
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
9491
9405
-
Ser
CGA
[ENA]
¡û
>WENV181805790
OGSJ01000558
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
21352
21438
+
Ser
CGA
[ENA]
¢þ
>WENV181809662
OGST01001220
[OGST] human gut metagenome; fecal sample 7 from infant 6
144
58
-
Ser
CGA
[ENA]
¢þ
>WENV182407443
OIFD01000020
[OIFD] human gut metagenome; stool
177091
177004
-
Ser
CGA
[ENA]
¢þ
>WENV182411989
OIFQ01006579
[OIFQ] human gut metagenome; stool
435
348
-
Ser
CGA
[ENA]
¢þ
>WENV182412939
OIFX01000003
[OIFX] human gut metagenome; stool
159255
159169
-
Ser
CGA
[ENA]
¢þ
>WENV182644207
OJLW01012865
[OJLW] metagenome; surface
798
712
-
Ser
CGA
[ENA]
¢þ
>WENV182645275
OJLY01007036
[OJLY] metagenome; surface
242
328
+
Ser
CGA
[ENA]
¢þ
>WENV182672040
OJNM01126471
[OJNM] metagenome; surface
533
445
-
Ser
CGA
[ENA]
¢þ
>WENV182809666
OJWS01000017
[OJWS] human gut metagenome; human gut
69551
69464
-
Ser
CGA
[ENA]
¢þ
>WENV182810029
OJWV01002140
[OJWV] human gut metagenome; human gut
170
257
+
Ser
CGA
[ENA]
¢þ
>WENV182814949
OJYO01000077
[OJYO] human gut metagenome; human gut
5867
5954
+
Ser
CGA
[ENA]
¢þ
>WENV182842532
OKIF01000014
[OKIF] human gut metagenome; human gut
34381
34468
+
Ser
CGA
[ENA]
¢þ
>WENV182857349
OKNX01000022
[OKNX] human gut metagenome; human gut
35058
35145
+
Ser
CGA
[ENA]
¢þ
>WENV183502125
OMGS01048282
[OMGS] human gut metagenome; human gut
578
491
-
Ser
CGA
[ENA]
¢þ
>WENV183508532
OMHE01000092
[OMHE] human oral metagenome; human oral
4106
4194
+
Ser
CGA
[ENA]
¢þ
>C181062014
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
2184268
2184354
+
Ser
CGA
-
¡û
>C181084656
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
214692
214606
-
Ser
CGA
-
¡û
>C181084681
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
3450452
3450366
-
Ser
CGA
-
¡û
>C181172319
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
210070
209982
-
Ser
CGA
-
¡û
>C181199714
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
3517580
3517670
+
Ser
CGA
-
¡û
>W09108390
ABTF01000003
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
515885
515971
+
Ser
CGA
[ENA]
¡û
>C191178121
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1612312
1612400
+
Ser
CGA
-
¡û
>W09121401
ACFG01000037
Actinomycetota
Gleimia coleocanis DSM 15436 [ACFG]
107555
107641
+
Ser
CGA
[ENA]
¡û
>W09134706
ACUY01000007
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
103613
103701
+
Ser
CGA
[ENA]
¡û
>W141731264
JNIY01000004
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
100998
101086
+
Ser
CGA
[ENA]
¡û
>W1910237238
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
1371800
1371886
+
Ser
CGA
[ENA]
¡û
>W1910374020
FUHX01000047
Actinomycetota
Actinomycetales bacterium JB111 [FUHX]
5755
5667
-
Ser
CGA
[ENA]
¡û
>W1910442477
FWFH01000018
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
5379
5293
-
Ser
CGA
[ENA]
¡û
>W1910442593
FWFI01000058
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
46607
46696
+
Ser
CGA
[ENA]
¡û
>W1910498717
FXXB01000005
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
202134
202224
+
Ser
CGA
[ENA]
¡û
>W1910550353
FZQV01000017
Actinomycetota
Ruaniaceae bacterium KH17 [FZQV]
487
399
-
Ser
CGA
[ENA]
¡û
>W1911203280
NRGR01000012
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
143827
143913
+
Ser
CGA
[ENA]
¡û
>W1911203332
NRGS01000013
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
36193
36279
+
Ser
CGA
[ENA]
¡û
>W1911502898
OEQC01000003
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
12671
12583
-
Ser
CGA
[ENA]
¡û
>W1911597360
PNHW01000002
Actinomycetota
Gleimia europaea UMB0652 [PNHW]
251090
251003
-
Ser
CGA
[ENA]
¡û
>W1911702236
QOCI01000009
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
122120
122209
+
Ser
CGA
[ENA]
¡û
>W1911726651
QSWH01000004
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
373951
374041
+
Ser
CGA
[ENA]
¡û
>W1810587393
QFKX01000003
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
324976
325065
+
Ser
CGA
[ENA]
¡û
>W1810756682
QPGF01000011
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
1052
966
-
Ser
CGA
[ENA]
¡û
>W1810756713
QPGG01000001
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
1047
961
-
Ser
CGA
[ENA]
¡û
>W1810756784
QPGH01000020
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
137484
137570
+
Ser
CGA
[ENA]
¡û
>W1810756826
QPGI01000016
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
118591
118677
+
Ser
CGA
[ENA]
¡û
>W1810756867
QPGJ01000004
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
318017
318103
+
Ser
CGA
[ENA]
¡û
>W1810756949
QPGK01000033
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
36221
36307
+
Ser
CGA
[ENA]
¡û
>W1810757139
QPGN01000013
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
76210
76296
+
Ser
CGA
[ENA]
¡û
>W1510021912
BCAK01000016
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
88605
88516
-
Ser
CGA
[ENA]
¡û
>C10101538
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
408929
409015
+
Ser
CGA
[Ensembl]
¡û
>W1511350955
JRMU01000010
Actinomycetota
Actinomyces sp. S4-C9 [JRMU]
100276
100364
+
Ser
CGA
[ENA]
¡û
>W121018112
AGSO01000006
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
95620
95531
-
Ser
CGA
[ENA]
¡û
>W1610885164
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
101498
101412
-
Ser
CGA
[ENA]
¡û
>W1610979012
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
746283
746371
+
Ser
CGA
[ENA]
¡û
>W1710533069
FNQV01000006
Actinomycetota
Bowdeniella nasicola [FNQV]
130427
130341
-
Ser
CGA
[ENA]
¡û
>W1710537595
FNTX01000002
Actinomycetota
Ruania alba album [FNTX]
1520353
1520441
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK