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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377758 (56 seq.)
>W1710909533
LNQO01000004
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
326197
326123
-
Gln
TTG
[ENA]
¡û
>W1711221493
LXRE01000004
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
132788
132860
+
Gln
TTG
[ENA]
¡û
>W1711234519
LYCQ01000274
Actinomycetota
Nocardia farcinica [LYCQ]
42240
42168
-
Gln
TTG
[ENA]
¡û
>W1711281950
LZMP01000020
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
58966
59038
+
Gln
TTG
[ENA]
¡û
>W1711460571
MJEI01000102
Actinomycetota
Williamsia sp. 1135 [MJEI]
65162
65088
-
Gln
TTG
[ENA]
¡û
>W1711460590
MJEJ01000013
Actinomycetota
Williamsia sp. 1138 [MJEJ]
27741
27815
+
Gln
TTG
[ENA]
¡û
>W1711776900
MVKV01000002
Actinomycetota
Gordonia sp. IITR100 [MVKV]
418138
418066
-
Gln
TTG
[ENA]
¡û
>W1712061691
NGFO01000009
Actinomycetota
Gordonia lacunae [NGFO]
48684
48612
-
Gln
TTG
[ENA]
¡û
>W131156576
AQPW01000032
Actinomycetota
Gordonia terrae C-6 [AQPW]
30298
30370
+
Gln
TTG
[ENA]
¡û
>W131162040
AQYG01000034
Actinomycetota
Jongsikchunia kroppenstedtii DSM 45133 [AQYG]
48205
48131
-
Gln
TTG
[ENA]
¡û
>W141194615
AYTE01000047
Actinomycetota
Williamsia sp. D3 [AYTE]
268330
268404
+
Gln
TTG
[ENA]
¡û
>WENV183746633
POYE01043103
[POYE] biofilm metagenome; steel pipe from biofilm reactor
136
208
+
Gln
TTG
[ENA]
¡û
>WENV170552596
CXWK01000515
[CXWK] wastewater metagenome; activated sludge
115162
115090
-
Gln
TTG
[ENA]
¡û
>WENV170566548
FKKE01046583
[FKKE] freshwater metagenome; freshwater
38
110
+
Gln
TTG
[ENA]
¡û
>WENV170975509
MTKZ01000941
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
335131
335059
-
Gln
TTG
[ENA]
¡û
>C181181616
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
1787627
1787699
+
Gln
TTG
-
¡û
>W141756189
JNXA01000002
Actinomycetota
Gordonia terrae [JNXA]
316301
316229
-
Gln
TTG
[ENA]
¡û
>W141758762
JNYV01000003
Actinomycetota
Kitasatospora arboriphila [JNYV]
512271
512345
+
Gln
TTG
[ENA]
¡û
>W141760716
JOAF01000004
Actinomycetota
Microbispora sp. NRRL B-24597 [JOAF]
512305
512379
+
Gln
TTG
[ENA]
¡û
>W1810069205
PEBD01000004
Actinomycetota
Williamsia marianensis BULT 1.1 [PEBD]
1076717
1076789
+
Gln
TTG
[ENA]
¡û
>W1810189524
PKJC01000002
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
431230
431158
-
Gln
TTG
[ENA]
¡û
>W1810577777
QEOM01000003
Actinomycetota
Williamsia marianensis DSM 44944 [QEOM]
379764
379692
-
Gln
TTG
[ENA]
¡û
>W1810658305
QJJF01000008
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
51296
51224
-
Gln
TTG
[ENA]
¡û
>W1810671179
QJSP01000003
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
52196
52124
-
Gln
TTG
[ENA]
¡û
>W2010164819
CABEIC010000002
Actinomycetota
Gordonia terrae NCTC10669 [CABEIC]
1786439
1786511
+
Gln
TTG
[ENA]
¡û
>W2011374991
RBKV01000001
Actinomycetota
Williamsia muralis DSM 44343 [RBKV]
3450666
3450594
-
Gln
TTG
[ENA]
¡û
>W2011539905
SCOC01000004
Actinomycetota
Gordonia sp. ALPHA1B1 [SCOC]
5934
5862
-
Gln
TTG
[ENA]
¡û
>W2011539944
SCOD01000006
Actinomycetota
Gordonia sp. ALPHA2A [SCOD]
45562
45490
-
Gln
TTG
[ENA]
¡û
>W2011540488
SCON01000058
Actinomycetota
Gordonia sp. GAMMA [SCON]
22029
21957
-
Gln
TTG
[ENA]
¡û
>W2011540703
SCOR01000001
Actinomycetota
Gordonia terrae K [SCOR]
45564
45492
-
Gln
TTG
[ENA]
¡û
>W2110019293
BMCS01000002
Actinomycetota
Williamsia phyllosphaerae CCM 7855 [BMCS]
334402
334330
-
Gln
TTG
[ENA]
¡û
>W2110495852
JAFFZF010000010
Actinomycetota
Gordonia sp. BP-119 [JAFFZF]
45608
45536
-
Gln
TTG
[ENA]
¡û
>W2110495881
JAFFZG010000002
Actinomycetota
Gordonia sp. BP-94 [JAFFZG]
188614
188686
+
Gln
TTG
[ENA]
¡û
>W2110519555
JAFRDR010000010
Actinomycetota
Williamsia sp. C17 [JAFRDR]
181882
181954
+
Gln
TTG
[ENA]
¡û
>W2110567640
JAGRQM010000001
Actinomycetota
Gordonia sp. SCSIO 19800 [JAGRQM]
438141
438069
-
Gln
TTG
[ENA]
¡û
>W2110593245
JAHCSG010000002
Actinomycetota
Williamsia sp. CHRR-6 [JAHCSG]
417729
417803
+
Gln
TTG
[ENA]
¡û
>C201228190
CP049836
Actinomycetota
Gordonia terrae RL-JC02 [CP049836]
4002997
4002925
-
Gln
TTG
-
¡û
>C231197215
CP084736
Actinomycetota
Gordonia sp. WA4-43 [CP084736]
5005640
5005712
+
Gln
TTG
-
¡û
>C231361814
CP095552
Actinomycetota
Gordonia hongkongensis JCM 31934 [CP095552]
1656677
1656749
+
Gln
TTG
-
¡û
>C231639454
CP121270
Actinomycetota
Gordonia hongkongensis RL-LY01 [CP121270]
1534414
1534486
+
Gln
TTG
-
¡û
>C241117926
CP047235
Actinomycetota
Gordonia sp. JH63 [CP047235]
1581132
1581204
+
Gln
TTG
-
¡û
>C241247548
CP123381
Actinomycetota
Gordonia sp. SMJS1 [CP123381]
1603307
1603379
+
Gln
TTG
-
¡û
>C161100040
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
1786375
1786447
+
Gln
TTG
-
¡û
>W121123871
BAEH01000115
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
8008
8080
+
Gln
TTG
[ENA]
¡û
>W121124392
BAFD01000096
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
22079
22151
+
Gln
TTG
[ENA]
¡û
>W1610078050
BDAP01000007
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
210411
210485
+
Gln
TTG
[ENA]
¡û
>C131001573
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
1657494
1657566
+
Gln
TTG
[Ensembl]
¡û
>W1610515301
FMAX01000004
Actinomycetota
Gordonia sp. v-85 [FMAX]
326197
326123
-
Gln
TTG
[ENA]
¡û
>W1610638758
LIYC01000008
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
16369
16297
-
Gln
TTG
[ENA]
¡û
>W1610767892
LNQO01000004
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
326197
326123
-
Gln
TTG
[ENA]
¡û
>W1611006011
LXRE01000004
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
132788
132860
+
Gln
TTG
[ENA]
¡û
>W1611041235
LZMP01000020
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
58966
59038
+
Gln
TTG
[ENA]
¡û
>W1710076609
BDAP01000007
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
210411
210485
+
Gln
TTG
[ENA]
¡û
>W1710500991
FMAX01000004
Actinomycetota
Gordonia sp. v-85 [FMAX]
326197
326123
-
Gln
TTG
[ENA]
¡û
>W1710598110
FTNT01000002
Actinomycetota
Williamsia sterculiae [FTNT]
241713
241641
-
Gln
TTG
[ENA]
¡û
>W1710774589
LIYC01000008
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
16369
16297
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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