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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377841 (94 seq.)
>W1711006241
LQOE01000073
Bacillota
Lactococcus sp. DD01 [LQOE]
88687
88616
-
Arg
CCG
[ENA]
¡û
>W1711228305
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
358109
358180
+
Arg
CCG
[ENA]
¡û
>W131010427
AHYM01000007
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
208142
208071
-
Arg
CCG
[ENA]
¡û
>W131202464
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1215901
1215830
-
Arg
CCG
[ENA]
¡û
>W1711744848
MUIZ01000001
Bacillota
Lactococcus petauri 159469 [MUIZ]
513630
513559
-
Arg
CCG
[ENA]
¡û
>W1711942769
NBBK01000006
Bacillota
Lactococcus garvieae [NBBK]
32096
32025
-
Arg
CCG
[ENA]
¡û
>W131037510
AMFD01000009
Bacillota
Lactococcus garvieae I113 [AMFD]
7814
7743
-
Arg
CCG
[ENA]
¡û
>W131037554
AMFE01000017
Bacillota
Lactococcus garvieae Tac2 [AMFE]
1831
1760
-
Arg
CCG
[ENA]
¡û
>W131044487
AMQS01000008
Bacillota
Lactococcus garvieae DCC43 [AMQS]
165264
165193
-
Arg
CCG
[ENA]
¡û
>WENV180182341
OAWO01010856
[OAWO] human gut metagenome; faeces
397
468
+
Arg
CCG
[ENA]
¡û
>WENV180454868
OBXO01000097
[OBXO] human gut metagenome; faeces
96161
96090
-
Arg
CCG
[ENA]
¡û
>W141096192
AVFE01000003
Bacillota
Lactococcus garvieae TRF1 [AVFE]
85576
85647
+
Arg
CCG
[ENA]
¡û
>W141238078
BBJW01000002
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
26700
26629
-
Arg
CCG
[ENA]
¡û
>WENV182518091
OIWP01000168
[OIWP] human gut metagenome; faeces
70111
70040
-
Arg
CCG
[ENA]
¡û
>WENV183180068
OLPH01054915
[OLPH] human gut metagenome; faeces
747
676
-
Arg
CCG
[ENA]
¡û
>WENV183276697
OLRZ01019743
[OLRZ] human gut metagenome; faeces
290
219
-
Arg
CCG
[ENA]
¡û
>WENV183511569
OMJG01000797
[OMJG] food metagenome; Cotija cheese
9882
9953
+
Arg
CCG
[ENA]
¡û
>WENV170547752
CXTS01000118
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
4661
4590
-
Arg
CCG
[ENA]
¡û
>WENV170548323
CXUD01001364
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
372
443
+
Arg
CCG
[ENA]
¡û
>WENV170549736
CXVH01001818
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
47
118
+
Arg
CCG
[ENA]
¡û
>WENV170549779
CXVI01000402
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
854
925
+
Arg
CCG
[ENA]
¡û
>C181001743
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
853384
853313
-
Arg
CCG
-
¡û
>C191044514
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
350337
350408
+
Arg
CCG
-
¡û
>W1910583236
JXJV01000002
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
49807
49878
+
Arg
CCG
[ENA]
¡û
>W1910641560
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
411230
411301
+
Arg
CCG
[ENA]
¡û
>W1810907545
QVHV01000001
Bacillota
Lactococcus petauri AM13-9 [QVHV]
74787
74716
-
Arg
CCG
[ENA]
¡û
>W2010145324
BLXU01000007
Bacillota
Lactococcus garvieae lg38 [BLXU]
65243
65172
-
Arg
CCG
[ENA]
¡û
>W2010259162
CABJEF020000001
Bacillota
Lactococcus garvieae [CABJEF]
74787
74716
-
Arg
CCG
[ENA]
¡û
>W2010632757
JABTTD010000001
Bacillota
Lactococcus petauri LZys1 [JABTTD]
174916
174845
-
Arg
CCG
[ENA]
¡û
>W2010762954
JXJV01000002
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
49807
49878
+
Arg
CCG
[ENA]
¡û
>W2010786186
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
411230
411301
+
Arg
CCG
[ENA]
¡û
>W2011490927
RSFD01000030
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
114988
115059
+
Arg
CCG
[ENA]
¡û
>W2011543965
SDHG01000005
Bacillota
Lactococcus petauri DB43829 [SDHG]
122224
122295
+
Arg
CCG
[ENA]
¡û
>W2011544022
SDHH01000007
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
26952
26881
-
Arg
CCG
[ENA]
¡û
>W2011544047
SDHI01000001
Bacillota
Lactococcus petauri DB22928 [SDHI]
351900
351971
+
Arg
CCG
[ENA]
¡û
>W2011544094
SDHJ01000001
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
343779
343850
+
Arg
CCG
[ENA]
¡û
>W2011544145
SDHK01000002
Bacillota
Lactococcus petauri DB44798 [SDHK]
267717
267646
-
Arg
CCG
[ENA]
¡û
>W2011544206
SDHL01000001
Bacillota
Lactococcus petauri FISH1 [SDHL]
277821
277750
-
Arg
CCG
[ENA]
¡û
>W2011544245
SDHM01000001
Bacillota
Lactococcus petauri GRT2 [SDHM]
373766
373837
+
Arg
CCG
[ENA]
¡û
>W2011544298
SDHN01000001
Bacillota
Lactococcus garvieae CT2 [SDHN]
18351
18280
-
Arg
CCG
[ENA]
¡û
>W2011544339
SDHO01000001
Bacillota
Lactococcus garvieae FISHB [SDHO]
169035
169106
+
Arg
CCG
[ENA]
¡û
>W2011544396
SDHP01000002
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
355474
355545
+
Arg
CCG
[ENA]
¡û
>W2011544447
SDHQ01000005
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
119203
119274
+
Arg
CCG
[ENA]
¡û
>W2011602723
SIVY01000027
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
178380
178309
-
Arg
CCG
[ENA]
¡û
>W2012206258
VXKD01000004
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
65297
65368
+
Arg
CCG
[ENA]
¡û
>W2110068660
BOVO01000004
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
82885
82956
+
Arg
CCG
[ENA]
¡û
>W2110068707
BOVP01000001
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
313001
312930
-
Arg
CCG
[ENA]
¡û
>W2110344951
JADMXE010000001
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
375818
375889
+
Arg
CCG
[ENA]
¡û
>W2110368978
JADPGL010000001
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
118917
118988
+
Arg
CCG
[ENA]
¡û
>W2110369580
JADPHA010000001
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
373473
373544
+
Arg
CCG
[ENA]
¡û
>W2110437308
JAEOAS010000001
Bacillota
Lactococcus petauri H10 [JAEOAS]
175470
175541
+
Arg
CCG
[ENA]
¡û
>W2110583768
JAGYXD010000001
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
67887
67958
+
Arg
CCG
[ENA]
¡û
>W2110583830
JAGYXE010000002
Bacillota
Lactococcus petauri INF110 [JAGYXE]
69642
69571
-
Arg
CCG
[ENA]
¡û
>C211210931
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
1979013
1978942
-
Arg
CCG
-
¡û
>C211212693
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
27153
27224
+
Arg
CCG
-
¡û
>C211219749
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
605376
605305
-
Arg
CCG
-
¡û
>C211221958
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
352532
352603
+
Arg
CCG
-
¡û
>C211222326
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
672439
672368
-
Arg
CCG
-
¡û
>C211289023
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
341763
341834
+
Arg
CCG
-
¡û
>C211289081
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
349306
349377
+
Arg
CCG
-
¡û
>C211289139
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
355789
355860
+
Arg
CCG
-
¡û
>C211289199
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
813483
813554
+
Arg
CCG
-
¡û
>C211289257
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
341993
342064
+
Arg
CCG
-
¡û
>C211289321
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
2099421
2099492
+
Arg
CCG
-
¡û
>C211408095
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1230936
1230865
-
Arg
CCG
-
¡û
>C231024826
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
339778
339849
+
Arg
CCG
-
¡û
>C231034124
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
377457
377528
+
Arg
CCG
-
¡û
>W1510060228
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
780232
780161
-
Arg
CCG
[ENA]
¡û
>W1510060345
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
780232
780161
-
Arg
CCG
[ENA]
¡û
>C231227671
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
385541
385612
+
Arg
CCG
-
¡û
>C231227731
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
340558
340629
+
Arg
CCG
-
¡û
>C231227791
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
415367
415438
+
Arg
CCG
-
¡û
>C231230508
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
393641
393712
+
Arg
CCG
-
¡û
>C231353063
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
356970
357041
+
Arg
CCG
-
¡û
>W2110761224
QSNN01000007
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
320487
320558
+
Arg
CCG
[ENA]
¡û
>C231519385
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
418496
418567
+
Arg
CCG
-
¡û
>C231519437
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
417797
417868
+
Arg
CCG
-
¡û
>C231627984
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
483216
483287
+
Arg
CCG
-
¡û
>W2110783076
WIVG01000020
Bacillota
Lactococcus garvieae EP01 [WIVG]
24140
24069
-
Arg
CCG
[ENA]
¡û
>C241103665
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
390468
390539
+
Arg
CCG
-
¡û
>C241278486
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
421653
421724
+
Arg
CCG
-
¡û
>C242000019
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
359172
359243
+
Arg
CCG
-
¡û
>C11112684
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
350272
350343
+
Arg
CCG
[Ensembl]
¡û
>C11112744
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
350329
350400
+
Arg
CCG
[Ensembl]
¡û
>W1511314679
JPUJ01000010
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
21808
21737
-
Arg
CCG
[ENA]
¡û
>W11157471
AFCC01000066
Bacillota
Lactococcus garvieae 21881 [AFCC]
1571
1500
-
Arg
CCG
[ENA]
¡û
>W11157519
AFCD01000071
Bacillota
Lactococcus garvieae 8831 [AFCD]
26839
26768
-
Arg
CCG
[ENA]
¡û
>W11162748
AFHF01000007
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
108387
108316
-
Arg
CCG
[ENA]
¡û
>W121016369
AGQX01000086
Bacillota
Lactococcus garvieae TB25 [AGQX]
68797
68726
-
Arg
CCG
[ENA]
¡û
>W121016400
AGQY01000093
Bacillota
Lactococcus garvieae LG9 [AGQY]
47589
47518
-
Arg
CCG
[ENA]
¡û
>W121081204
AKFO01000008
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
343180
343251
+
Arg
CCG
[ENA]
¡û
>W1610856891
LQOE01000073
Bacillota
Lactococcus sp. DD01 [LQOE]
88687
88616
-
Arg
CCG
[ENA]
¡û
>W1611012222
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
358109
358180
+
Arg
CCG
[ENA]
¡û
>W1710568164
FOTJ01000002
Bacillota
Lactococcus garvieae [FOTJ]
54465
54536
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK