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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377932 (42 seq.)
>W1711385705
MEEM01000010
Bacteroidota
Niabella sp. SCN 42-15 [MEEM]
5692
5618
-
Glu
TTC
[ENA]
¡û
>W1711501402
MKRO01000233
Bacteroidota
Sphingobacteriales bacterium 41-5 [MKRO]
12258
12184
-
Glu
TTC
[ENA]
¡û
>W131170017
ARFF01000013
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
20235
20309
+
Glu
TTC
[ENA]
¡û
>W131237205
AUNO01000103
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
210
136
-
Glu
TTC
[ENA]
¡û
>WENV180023436
FTHW01015340
[FTHW] metagenome; soil
133
61
-
Glu
TTC
[ENA]
¡û
>WENV180027297
FTIX01066827
[FTIX] metagenome; soil
383
311
-
Glu
TTC
[ENA]
¡û
>WENV183737985
PJUD01061555
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
444
516
+
Glu
TTC
[ENA]
¡û
>WENV183737986
PJUD01061555
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
786
858
+
Glu
TTC
[ENA]
¡û
>WENV183740958
PJUF01021904
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
665
737
+
Glu
TTC
[ENA]
¡û
>WENV170010617
APMI01022625
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1227
1299
+
Glu
TTC
[ENA]
¡û
>WENV170011483
APMI01068503
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1719
1647
-
Glu
TTC
[ENA]
¡û
>WENV170011629
APMI01078252
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
75
+
Glu
TTC
[ENA]
¡û
>WENV170645774
JPYU01054131
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
317
391
+
Glu
TTC
[ENA]
¡û
>WENV170983972
MWVV01134954
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
475
401
-
Glu
TTC
[ENA]
¡û
>WENV170988339
MWVX01461039
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
118
192
+
Glu
TTC
[ENA]
¡û
>WENV170998621
MWWJ01059702
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
346
420
+
Glu
TTC
[ENA]
¡û
>WENV170998911
MWWJ01157867
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
140
212
+
Glu
TTC
[ENA]
¡û
>W1810692646
QLKR01000017
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
13511
13439
-
Glu
TTC
[ENA]
¡û
>W1810692647
QLKR01000017
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
10556
10482
-
Glu
TTC
[ENA]
¡û
>C151016373
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
2240047
2240121
+
Glu
TTC
[Ensembl]
¡û
>W2012002623
VEHN01000009
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
14064
13992
-
Glu
TTC
[ENA]
¡û
>W2012082527
VLLG01000002
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
2132434
2132362
-
Glu
TTC
[ENA]
¡û
>W2012082528
VLLG01000002
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
2107017
2106945
-
Glu
TTC
[ENA]
¡û
>W2110597218
JAHEAH010000002
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
158876
158804
-
Glu
TTC
[ENA]
¡û
>W2110597219
JAHEAH010000002
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
158742
158670
-
Glu
TTC
[ENA]
¡û
>W2110641862
JAHSPG010000016
Bacteroidota
Parasegetibacter sp. MAH-26 [JAHSPG]
87590
87662
+
Glu
TTC
[ENA]
¡û
>W2110692667
JAIQDI010000001
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
3821254
3821182
-
Glu
TTC
[ENA]
¡û
>C211367322
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
5720872
5720944
+
Glu
TTC
-
¡û
>C211367323
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
5724745
5724817
+
Glu
TTC
-
¡û
>W1510019468
BBWV01000004
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
8700
8772
+
Glu
TTC
[ENA]
¡û
>W2110748392
MBUA01000030
Bacteroidota
Flavihumibacter stibioxidans YS-17 [MBUA]
9037
9109
+
Glu
TTC
[ENA]
¡û
>C231314686
CP092334
Bacteroidota
Flavihumibacter rivuli IMCC34838 [CP092334]
76237
76165
-
Glu
TTC
-
¡û
>C231314687
CP092334
Bacteroidota
Flavihumibacter rivuli IMCC34838 [CP092334]
76103
76031
-
Glu
TTC
-
¡û
>C241352446
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
1136349
1136421
+
Glu
TTC
-
¡û
>C241352447
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
1139304
1139378
+
Glu
TTC
-
¡û
>W1511387785
JSVC01000045
Bacteroidota
Flavihumibacter solisilvae 3-3 [JSVC]
9095
9169
+
Glu
TTC
[ENA]
¡û
>C161090543
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3537105
3537179
+
Glu
TTC
[Ensembl]
¡û
>W121017763
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
11174
11248
+
Glu
TTC
[ENA]
¡û
>W1610935517
LUKG01000026
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
12690
12764
+
Glu
TTC
[ENA]
¡û
>W1710512669
FMZO01000007
Bacteroidota
Niabella drilacis [FMZO]
236054
235980
-
Glu
TTC
[ENA]
¡û
>W1710544826
FOBB01000011
Bacteroidota
Chitinophaga rupis [FOBB]
37464
37536
+
Glu
TTC
[ENA]
¡û
>W1710544827
FOBB01000011
Bacteroidota
Chitinophaga rupis [FOBB]
72695
72769
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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