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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378157 (21 seq.)
>W1711078227
LSMR01000119
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
10659
10733
+
Gln
TTG
[ENA]
¡û
>W1711128978
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76475
76549
+
Gln
TTG
[ENA]
¡û
>W1711128979
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76753
76827
+
Gln
TTG
[ENA]
¡û
>W1711129041
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
32884
32810
-
Gln
TTG
[ENA]
¡û
>WENV183057407
OLHL01001606
[OLHL] seawater metagenome; Sea water
2046
1972
-
Gln
TTG
[ENA]
¡û
>WENV170263015
CERC01012151
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9187
9261
+
Gln
TTG
[ENA]
¡û
>WENV170647335
JQIA01021399
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
872
946
+
Gln
TTG
[ENA]
¡û
>C231011315
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4150461
4150535
+
Gln
TTG
-
¡û
>C231011317
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4155971
4156045
+
Gln
TTG
-
¡û
>C231011319
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4156158
4156232
+
Gln
TTG
-
¡û
>C231011320
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4156255
4156329
+
Gln
TTG
-
¡û
>C231019854
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3418079
3418153
+
Gln
TTG
-
¡û
>C231019855
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3418349
3418423
+
Gln
TTG
-
¡û
>W2310024234
BSNM01000016
Gammaproteobacteria
Litoribrevibacter albus NBRC 110071 [BSNM]
29294
29368
+
Gln
TTG
[ENA]
¡û
>W1610917243
LSMR01000119
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
10659
10733
+
Gln
TTG
[ENA]
¡û
>W1610940051
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76475
76549
+
Gln
TTG
[ENA]
¡û
>W1610940052
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76753
76827
+
Gln
TTG
[ENA]
¡û
>W1610940114
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
32884
32810
-
Gln
TTG
[ENA]
¡û
>W1710551426
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
52989
53063
+
Gln
TTG
[ENA]
¡û
>W1710551428
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
56893
56967
+
Gln
TTG
[ENA]
¡û
>W1710551430
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
57092
57166
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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